Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120427.Seq
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    25   1.0  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    25   1.0  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    25   1.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.4  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 296 SSTSMTTPISLFKCRRSCCMLCRVCPDTRGFGEN-HTTANRRACNKVDSETIYRF 135
           + +S    +  FK   +CC    +CPD    GE+ H   N  +  ++  +   +F
Sbjct: 41  NKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCDCDDKF 95


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 296 SSTSMTTPISLFKCRRSCCMLCRVCPDTRGFGEN-HTTANRRACNKVDSETIYRF 135
           + +S    +  FK   +CC    +CPD    GE+ H   N  +  ++  +   +F
Sbjct: 46  NKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCDCDDKF 100


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 296 SSTSMTTPISLFKCRRSCCMLCRVCPDTRGFGEN-HTTANRRACNKVDSETIYRF 135
           + +S    +  FK   +CC    +CPD    GE+ H   N  +  ++  +   +F
Sbjct: 46  NKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCDCDDKF 100


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 328 KQDAKLALQTLTNFESLSDLM 390
           K+D +L LQT+ N + L +LM
Sbjct: 24  KEDTELNLQTIFNEDKLDNLM 44


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 19  CNGATRQTVARNYRS*RR 72
           C   TRQ +  +YRS RR
Sbjct: 121 CENETRQGLTLHYRSKRR 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,737
Number of Sequences: 438
Number of extensions: 3516
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)