Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120427.Seq
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS...    29   3.3  
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS...    29   3.3  
At4g24820.2 68417.m03556 26S proteasome regulatory subunit, puta...    28   5.8  
At4g24820.1 68417.m03555 26S proteasome regulatory subunit, puta...    28   5.8  
At3g57920.1 68416.m06456 squamosa promoter-binding protein, puta...    28   7.7  

>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
           family protein / zinc knuckle (CCHC-type) family protein
           contains Pfam domains PF00098: Zinc knuckle, PF04046:
           PSP
          Length = 403

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 333 RCQTCAANAHKLRVAIRSNGKLQLFNARPGHKRIR 437
           RC  C A +H +R   R   +  + NAR  HKR R
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKR 231


>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
           family protein / zinc knuckle (CCHC-type) family protein
           contains Pfam domains PF00098: Zinc knuckle, PF04046:
           PSP
          Length = 405

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 333 RCQTCAANAHKLRVAIRSNGKLQLFNARPGHKRIR 437
           RC  C A +H +R   R   +  + NAR  HKR R
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKR 231


>At4g24820.2 68417.m03556 26S proteasome regulatory subunit,
           putative (RPN7) contains similarity to ubiquitin
           activating enzyme GI:3647283 from [Lycopersicon
           esculentum]
          Length = 387

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 289 VEEYFYCLSSCNFKQDAKLALQTLTNF 369
           V E  YC+S+ NFK+ A L L +++ F
Sbjct: 180 VYEGLYCMSTRNFKKAASLFLDSISTF 206


>At4g24820.1 68417.m03555 26S proteasome regulatory subunit,
           putative (RPN7) contains similarity to ubiquitin
           activating enzyme GI:3647283 from [Lycopersicon
           esculentum]
          Length = 387

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 289 VEEYFYCLSSCNFKQDAKLALQTLTNF 369
           V E  YC+S+ NFK+ A L L +++ F
Sbjct: 180 VYEGLYCMSTRNFKKAASLFLDSISTF 206


>At3g57920.1 68416.m06456 squamosa promoter-binding protein,
           putative similar to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931677;
           contains Pfam profile PF03110: SBP domain
          Length = 354

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 296 NTFTVCRRVILNKMPNLRCKRSQTSSRYPI*WQATTFQRPTW 421
           ++FT C  +I N   +  C  S  S+ YPI  Q       TW
Sbjct: 203 SSFTTCPEMINNNSTDSSCALSLLSNSYPIHQQQLQTPTNTW 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,489
Number of Sequences: 28952
Number of extensions: 298238
Number of successful extensions: 731
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)