Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120426.Seq
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    28   1.5  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    27   2.0  
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   4.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   6.0  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   6.0  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.9  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   7.9  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    25   7.9  

>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 523 GRNFSHGRR--SAPLCVPTAETLLEFPSPVAAIRFRQHDETSSQPKLAFRRQK 371
           G+N +HGRR  +  LC    +  +   +P     +       S+P+ AF++Q+
Sbjct: 31  GQNHTHGRRRNTLALCTTKDQMFVYGSTPAGGAEWCSEALERSRPRAAFKQQR 83


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
 Frame = -2

Query: 339 FIIHDCRWQIAK------HKAFIAHVEIKTSVFEFNGS 244
           F+I  C W I +         FI H  +   VFEF GS
Sbjct: 182 FLITSCNWTIQELEERFTKNGFIVHSTVPVPVFEFQGS 219


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 427 FRQHDETSSQPKLAFRRQKLEIQCAV 350
           F+ HDE ++ P L +R+ K  I C +
Sbjct: 47  FQCHDELNTHPFLPWRKAKFHIPCVI 72


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 547 CNCRTIKLNGMRSSKKIKRQ 606
           C C T+K NG+++ +KI RQ
Sbjct: 127 CMCCTVKDNGIKALEKIMRQ 146


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 23  ELYNIKYAIDPTNKIVIEQV 82
           +LYNI+YA+ PT +I I ++
Sbjct: 621 QLYNIQYAMLPTKRISIRKL 640


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 454 IQEASRLSGHIKVPNGVRVKNCD 522
           IQ  +  SG+ K P+ +++KNC+
Sbjct: 907 IQHTTSSSGYEKAPSYIKLKNCE 929


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 351 FLLCFIIHDCRWQIAKHKAFIAHVEIKTSVFE 256
           FL+  I    +W   +HKAF+    I+++ FE
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFE 329


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 29  YNIKYAIDPTNKIVIEQVDNVDAFVHILEPG 121
           Y  KYAI+  ++ +  ++ ++   V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 29  YNIKYAIDPTNKIVIEQVDNVDAFVHILEPG 121
           Y  KYAI+  ++ +  ++ ++   V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,128
Number of Sequences: 5004
Number of extensions: 63701
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)