Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120426.Seq
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55...    30   1.5  
05_07_0089 - 27619053-27620138                                         30   1.5  
06_03_0896 + 25753377-25754325,25755081-25755691                       30   2.0  
12_02_0235 + 16079042-16079410                                         29   2.7  
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515...    29   2.7  
05_04_0442 - 21280804-21280897,21281287-21281684                       29   3.5  
09_04_0607 - 18918624-18918710,18918918-18919034,18919652-189200...    29   4.7  
06_02_0280 - 13708651-13708839,13708895-13709164,13709889-137104...    29   4.7  
03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270     29   4.7  
05_04_0045 - 17477470-17477570,17477753-17477774,17477942-174780...    28   6.2  
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550...    28   8.2  

>08_01_0077 +
           546473-546512,546739-547013,547772-547885,548002-550245
          Length = 890

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 35  IKYAIDPTNKIVIEQVDNVDAFVHILEPG 121
           +  +I+  NKI I   D VD  +H+LE G
Sbjct: 621 LNLSINDNNKIAIANADAVDPLIHVLETG 649


>05_07_0089 - 27619053-27620138
          Length = 361

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 384 KASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERRPC 509
           +A F C   S+C    ++ T   N+  V+ +G  KG    PC
Sbjct: 24  RALFSCGIFSTCTHPALSPTATPNNNVVAGMGGAKGGSGTPC 65


>06_03_0896 + 25753377-25754325,25755081-25755691
          Length = 519

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
 Frame = -2

Query: 489 LYVSRQPRRFLNSRHR*QPFVFANTMKRRHNRN*LFAGKNWRSNAQFLLCFIIHDCRWQI 310
           + VSR PRR    RHR + F F + +   H  N   +G++       LL      C    
Sbjct: 236 MVVSRMPRRM--RRHREEVFAFLDAIIAEHQEN-RASGEDEEDLLDVLLRIQREGCMEST 292

Query: 309 AKHKAFIAHVEIKTSVFEFNGSK--LPSSLKTLIIVFNTSC 193
             H+    +   K S    N SK  LPS L      F+T C
Sbjct: 293 VIHRIHQDNNWRKYSHEHTNNSKKRLPSKLAKSYHGFSTKC 333


>12_02_0235 + 16079042-16079410
          Length = 122

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 378 RRKASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERR 503
           +RKA  G D      +  MAA  +G S  V  +G H+ AERR
Sbjct: 40  QRKAGTGGDGSE---KTMMAARAEGGSNWVEVIGCHEKAERR 78


>02_01_0690 -
           5152224-5152386,5152490-5152687,5152815-5153014,
           5153122-5153223,5153414-5153550,5153688-5153798,
           5156092-5156344,5157954-5158052,5158449-5158739
          Length = 517

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 457 EFPSPVAAIRFRQHDETSSQPKLAFRRQKLEIQCAVFALFH 335
           E PS   A RF+QH   S  P   FR+  +EI+  ++   H
Sbjct: 301 ELPSTFKAFRFQQH-RWSCGPANLFRKMLMEIKVTIWKKIH 340


>05_04_0442 - 21280804-21280897,21281287-21281684
          Length = 163

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +3

Query: 366 SNFCRRKASFG----CDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERRPCEKLRPNMS 533
           +N C +KA+ G       V SC RKR AA GD     +  V     A RRP  + R   +
Sbjct: 34  NNRCGKKAATGRKAAAAAVESCSRKRAAAAGD-----IDEVVIGGEARRRP--RFRSLAA 86

Query: 534 VYGTVQLPYDKI 569
           VY   + P D +
Sbjct: 87  VYRETRRPNDHV 98


>09_04_0607 -
           18918624-18918710,18918918-18919034,18919652-18920030,
           18921220-18921359
          Length = 240

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 65  IVIEQVDNVDAFVHILEPGQEVFDETLSRYHQFPGVVSSIIF 190
           I+++ +   + F   +E   E+F+ +LS   Q+PGV + + F
Sbjct: 179 ILLDDLSLANQFQTFIERIDEIFEVSLSTNQQYPGVYALLFF 220


>06_02_0280 -
           13708651-13708839,13708895-13709164,13709889-13710476,
           13710511-13710686,13710897-13711029,13711193-13711462,
           13711521-13711889
          Length = 664

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = +1

Query: 376 AGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKVPNG-VRVKNCDPTCLFTGLCN 552
           AG    S     H V E E L     +     L  H K P G ++  + D TC       
Sbjct: 115 AGGAFFSKTRGMHTVKETEMLAAKLDLL-MKLLDDHDKRPQGTIKALDSDVTCEV----- 168

Query: 553 CRTIKLNGMRSSKKIKRQTRWSLV 624
           C +   +GM + K +KR+  W+ +
Sbjct: 169 CGSTGHSGMTAQKPVKRRCTWATI 192


>03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270
          Length = 121

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 159 WWYRLSVSSNTS*PGSRICTNASTLSTCSITILFVGSIAYLILY 28
           WW+ +  S+  S P   +  + S      +  LFVG++A ++++
Sbjct: 78  WWWSIGASAVDSQPWRSVTLSGSRSGASLLLGLFVGNVAIILIW 121


>05_04_0045 -
           17477470-17477570,17477753-17477774,17477942-17478017,
           17478288-17478397,17478674-17478743,17478847-17479178
          Length = 236

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 384 KASFG-CDDVSSCWRKRMAATGDGNSRSVSAVG 479
           KAS+   DD  S W  R+AA  + +S S SA G
Sbjct: 66  KASWSVADDEESRWLDRLAADAESSSSSASAAG 98


>03_02_0081 -
           5506194-5506197,5506310-5507170,5507299-5507456,
           5507549-5507740
          Length = 404

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +2

Query: 122 QEVFDETLSRYHQFPGVVSSIIFTQLVLNTIISVLSEDG 238
           + ++D   +    FP  + +++  QL + T ++V+ +DG
Sbjct: 197 ERLYDGRFAHVEFFPADIGAVLGNQLSIGTFLAVIDDDG 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,192,083
Number of Sequences: 37544
Number of extensions: 403409
Number of successful extensions: 1239
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)