Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120426.Seq
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)                   30   1.6  
SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)         28   6.3  
SB_51948| Best HMM Match : Cation_efflux (HMM E-Value=0.58)            28   8.4  
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         28   8.4  

>SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 561 DKIKRHALEQENKTPNALESCVLFYKDSEIRITYNRGT 674
           DK+KR+  E E +T   LE C++   D E   T+++GT
Sbjct: 117 DKVKRYTREDEQQTVERLERCLVKRCDDE---TFSKGT 151


>SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)
          Length = 649

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 388 LVSVVTT-FHRVGENEWLLPVTGIQEASRLSGHIKVPNGVR 507
           LVS+  T F  V  NE  LP +G+    R S H+ VP+ +R
Sbjct: 131 LVSLSQTHFGNVSTNEVTLPQSGVTAFRRASAHVPVPDCLR 171


>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
          Length = 798

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 312 IAKHKAFIAHVEIKTSVFEFNGSKLPSSLKTLIIVFNTSCVKIIELTTPGNWW 154
           IAK +  +A     + +F+F   ++ S+++T    F  S VK ++ T    WW
Sbjct: 446 IAKRQKMLAKFGSDSVIFKFWRGRVVSAIRTCKRSFYQSKVKKLKDTNTRRWW 498


>SB_51948| Best HMM Match : Cation_efflux (HMM E-Value=0.58)
          Length = 262

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 149 RYHQFPGVVSSIIFTQLVLNTIISVL-SEDGSLLPLNSKTLVLISTCAINALCLAI 313
           ++H+FP V++S +F   + +TI++       + L + +  +VL S   + AL L +
Sbjct: 29  QFHKFPAVLNSFVFLLFLSSTILTATWVVFLNRLMVTAACIVLFSAVFLTALALVL 84


>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -2

Query: 312  IAKHKAFIAHVEIKTSVFEFNGSKLPSSLKTLIIVFNTSCVKIIELTTPGNWWYRLSVSS 133
            IAK + F+A     + +F+   +K+  ++K     F  + VK ++ T  G WW  +   +
Sbjct: 983  IAKRQKFLAMYGKDSPLFKSVRNKVLLTVKNSKRAFYNNKVKNLKETCVGRWWKEIKSLA 1042

Query: 132  NTS*PGSR 109
              S   SR
Sbjct: 1043 GVSKKESR 1050


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,808,379
Number of Sequences: 59808
Number of extensions: 489935
Number of successful extensions: 1580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)