Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120426.Seq
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 32 0.45
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 32 0.45
Z81122-5|CAB03357.1| 579|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81064-2|CAB02963.1| 259|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 27 9.8
U39471-1|AAA80132.4| 461|Caenorhabditis elegans Intestinal acid... 27 9.8
U28943-8|AAK68293.1| 325|Caenorhabditis elegans Serpentine rece... 27 9.8
L10990-2|AAL02453.1| 362|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 507 CEKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNALESCVLFYKDSEIRITYNRGTMKL 683
CE+L+ N + G +DK+ +HA+++ + L C L SE I + K+
Sbjct: 2900 CERLKKNWAELGIEVESWDKLVQHAMQRLQELERNLAECQLHLTSSENEIETMKAVEKI 2958
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 507 CEKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNALESCVLFYKDSEIRITYNRGTMKL 683
CE+L+ N + G +DK+ +HA+++ + L C L SE I + K+
Sbjct: 2900 CERLKKNWAELGIEVESWDKLVQHAMQRLQELERNLAECQLHLTSSENEIETMKAVEKI 2958
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 507 CEKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNALESCVLFYKDSEIRITYNRGTMKL 683
CE+L+ N + G +DK+ +HA+++ + L C L SE I + K+
Sbjct: 2900 CERLKKNWAELGIEVESWDKLVQHAMQRLQELERNLAECQLHLTSSENEIETMKAVEKI 2958
>Z81122-5|CAB03357.1| 579|Caenorhabditis elegans Hypothetical
protein T13F2.6 protein.
Length = 579
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 252 NGSKLPSSLKTLIIVFNTSCVKIIELTTPGNWWYRLSV 139
NGS S K I V + C+ ++ TPGN W +L +
Sbjct: 69 NGSFSFDSSKKQIHVKSVKCIYMLPKATPGNKWAQLKL 106
>Z81064-2|CAB02963.1| 259|Caenorhabditis elegans Hypothetical
protein F16B12.2 protein.
Length = 259
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 378 RRKASFGCDDVSSCWRKRMAATGDGNSRSVSAVG-THKGAERR 503
+R A + C D C K + + DG SR AVG T K ER+
Sbjct: 168 KRIARWDCSDEGYCQNKGVCSFVDGISRCRCAVGFTGKHCERK 210
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 453 NSRSVSAVGTHKGAERRPCEKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNALESCVLF 632
N + VSA+ + A RP + T +L DK K L++++K E
Sbjct: 26 NQQVVSAIEVKQPAVPRPAMSFDADEGADSTFKLKKDKKKVEELKRQHKLEEEAEK---L 82
Query: 633 YKDSEIR 653
YK+ +IR
Sbjct: 83 YKEEKIR 89
>Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 453 NSRSVSAVGTHKGAERRPCEKLRPNMSVYGTVQLPYDKIKRHALEQENKTPNALESCVLF 632
N + VSA+ + A RP + T +L DK K L++++K E
Sbjct: 26 NQQVVSAIEVKQPAVPRPAMSFDADEGADSTFKLKKDKKKVEELKRQHKLEEEAEK---L 82
Query: 633 YKDSEIR 653
YK+ +IR
Sbjct: 83 YKEEKIR 89
>U39471-1|AAA80132.4| 461|Caenorhabditis elegans Intestinal acid
phosphatase protein4 protein.
Length = 461
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 498 VRHLYVSRQPRRFLNSRHR*QPFVFANTMKRR 403
+R YV+ QP +FLN+R+ Q +T K R
Sbjct: 82 LRARYVNGQPYKFLNTRYNQQEIFVRSTDKNR 113
>U28943-8|AAK68293.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 58 protein.
Length = 325
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -2
Query: 243 KLPSSLKTL-IIVFNTSCVKIIELTTPGNWWYRLSVSSNTS 124
K P++L L I ++NTSCV+I +T +RL +SN++
Sbjct: 37 KSPATLDGLKIFLYNTSCVQIALITFAFLSQHRLLTNSNSA 77
>L10990-2|AAL02453.1| 362|Caenorhabditis elegans Hypothetical
protein C30A5.6 protein.
Length = 362
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 158 QFPGVVSSIIFTQLVLNTIISVLSEDGSLLPLNSKTLVLISTCA 289
Q P +V ++ ++++ TI SVLS L+ ++++ L+L S A
Sbjct: 144 QLPSIVKALTDLEIMIFTIFSVLSALTCLMLISTEWLLLASDSA 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,984,941
Number of Sequences: 27780
Number of extensions: 376499
Number of successful extensions: 1247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -