Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120426.Seq
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59270.1 68416.m06607 syntaxin-related family protein contain...    31   0.97 
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    29   3.0  
At1g32120.1 68414.m03952 expressed protein contains Pfam profile...    29   3.0  
At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA li...    29   3.0  
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea...    29   3.9  
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do...    29   3.9  
At1g11925.1 68414.m01377 stigma-specific Stig1 family protein co...    28   6.8  
At5g13890.3 68418.m01625 expressed protein contains Pfam profile...    27   9.0  
At5g13890.2 68418.m01624 expressed protein contains Pfam profile...    27   9.0  
At5g13890.1 68418.m01623 expressed protein contains Pfam profile...    27   9.0  

>At3g59270.1 68416.m06607 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At1g56610,
           At3g54160, At1g47920 (syntaxin SYP81), At5g41830,
           At3g44180,  At1g48390, At3g59270  [Arabidopsis thaliana]
          Length = 335

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 360 WISNFCRRKASFGCDDVSSCWRKRMAATGDG 452
           WI+N  +R+ S    D+SSCW   M+   DG
Sbjct: 62  WITNVLKRRVSELALDISSCWDWPMSTAIDG 92


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 181 DYFHATRVKHNN*RFERRRQFAAVELENTCFNFHVCNKRFVFGNLPAAIVNNETKQKL 354
           +YFH     H    F   R F  + L+  C      N+R V+G++P    +N+T   L
Sbjct: 814 EYFHGNSETHPFRIFAVVRDFLTI-LDQVCKEVGRVNERTVYGSMPLHSPSNQTATPL 870


>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
            PF04819: Family of unknown function (DUF716) (Plant
            viral-response family)
          Length = 1206

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 215  ISVLSEDGSLLPLNSKTLVLISTCAINALCL 307
            I++LSE   LLPL  + L LI+  A  A CL
Sbjct: 1050 IALLSEKTRLLPLPQEALCLIAATAFTAECL 1080


>At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA
           ligase (VALRS) nearly identical to SP|P93736 Valyl-tRNA
           synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)
           {Arabidopsis thaliana}
          Length = 1108

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 285 HVEIKTSVFEFNGSKLPSSLKTLII--VFNTSCVKIIELTTPGN 160
           H+  K +V  FNG KLP     +++   F T CVKI     P +
Sbjct: 389 HLHGKFAVHPFNGRKLPIICDGILVDPNFGTGCVKITPAHDPND 432


>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to cleavage stimulation factor 50K chain Homo
           sapiens, PIR:A45142
          Length = 429

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 604 GVLFSCSSACRLILSYGNCTVP*TDMLGRNFSHGRRSAPLCVPTAE--TLLEFPSPVAAI 431
           G L   SS+  L  SYG+ T P T  +  + +H + S+   +P  E  TL E  S V   
Sbjct: 71  GTLRGVSSSVLLPSSYGSITTPRTASIDFSVNHAKGSSK-TIPKHESKTLSEHKSVVRCA 129

Query: 430 RF 425
           RF
Sbjct: 130 RF 131


>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
           domain-containing protein low similarity to polyamine
           oxidase isoform-1 [Homo sapiens] GI:14860862; contains
           Pfam profiles PF01593: amine oxidase flavin-containing,
           PF04433: SWIRM domain
          Length = 1265

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 384 KASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERRPCEKLRP 524
           KAS   DD  + +RKR+     G     S V  H+G +      L+P
Sbjct: 69  KASEDMDDTLASFRKRLKGNKKGVESGTSRVRNHEGVDTVTNSNLKP 115


>At1g11925.1 68414.m01377 stigma-specific Stig1 family protein
           contains Pfam profile PF04885: Stigma-specific protein,
           Stig1
          Length = 121

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 49  RSNK*NCNRASRQCGRICAYPRTGSRSVRR 138
           R+NK NC R    CG+ C Y     RS R+
Sbjct: 75  RTNKLNCGR----CGKSCQYSEVALRSARK 100


>At5g13890.3 68418.m01625 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 310

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 155 HQFPGVVSSIIFTQLVLNTIISVLSEDGSLLPLNSKTLVLIST 283
           H+F  + S+ +F   ++  I  +LS+  SL+PL S  L  +++
Sbjct: 98  HRFSSLNSAAVFFLFLIIAIYYLLSDSTSLIPLPSDLLFALAS 140


>At5g13890.2 68418.m01624 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 310

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 155 HQFPGVVSSIIFTQLVLNTIISVLSEDGSLLPLNSKTLVLIST 283
           H+F  + S+ +F   ++  I  +LS+  SL+PL S  L  +++
Sbjct: 98  HRFSSLNSAAVFFLFLIIAIYYLLSDSTSLIPLPSDLLFALAS 140


>At5g13890.1 68418.m01623 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 310

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 155 HQFPGVVSSIIFTQLVLNTIISVLSEDGSLLPLNSKTLVLIST 283
           H+F  + S+ +F   ++  I  +LS+  SL+PL S  L  +++
Sbjct: 98  HRFSSLNSAAVFFLFLIIAIYYLLSDSTSLIPLPSDLLFALAS 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,626,344
Number of Sequences: 28952
Number of extensions: 333042
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)