Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120424.Seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53693| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       28   6.1  
SB_44172| Best HMM Match : Pkinase_Tyr (HMM E-Value=6.3e-20)           28   8.1  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_53693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -1

Query: 600 YSTQMRL*FPRTIKVFRKIPVSGDIIIK 517
           Y T  RL  P    V RKI V+GD+IIK
Sbjct: 453 YDTISRLNVPGFSTVTRKIKVAGDVIIK 480


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 499 NLSFSPLYNNISTYRNFSEHFYSSRELQSHLCR 597
           ++ F  LY   +T+ + SEHF +S + ++  CR
Sbjct: 891 SIEFYQLYEQAATWMSDSEHFLNSTKEEAQKCR 923


>SB_44172| Best HMM Match : Pkinase_Tyr (HMM E-Value=6.3e-20)
          Length = 637

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 595 DTNEIVIPSNYKSVPKNSCKWRYYYKEVKSLNSK 494
           +T   V+P NY S+P  S  W    K   +LN K
Sbjct: 64  ETKPHVLPLNYTSIPPASIIWTLPDKSTLALNDK 97


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 595 DTNEIVIPSNYKSVPKNSCKWRYYYKEVKSLN 500
           +T  +V+P NY S+P  S  W    K   +LN
Sbjct: 340 ETKPLVLPLNYTSIPPASIIWTLPDKSTLALN 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,016,923
Number of Sequences: 59808
Number of extensions: 263088
Number of successful extensions: 496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)