Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120421.Seq
(775 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 99 1e-19
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 50 9e-05
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 48 3e-04
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 46 0.001
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 45 0.002
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 42 0.017
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 40 0.069
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 40 0.091
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 36 0.85
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 36 0.85
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 36 1.1
UniRef50_Q2UBZ7 Cluster: Predicted protein; n=1; Aspergillus ory... 34 4.5
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 98.7 bits (235), Expect = 1e-19
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +3
Query: 255 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMT*TTNKVSLSLAS 434
MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL+ N++ + + S
Sbjct: 1 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIP-LLNQLGIGVTS 59
Score = 94.7 bits (225), Expect = 2e-18
Identities = 44/45 (97%), Positives = 45/45 (100%)
Frame = +1
Query: 73 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 207
FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL+
Sbjct: 3 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLI 47
Score = 90.6 bits (215), Expect = 4e-17
Identities = 42/42 (100%), Positives = 42/42 (100%)
Frame = +2
Query: 638 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNS 763
FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNS
Sbjct: 3 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNS 44
Score = 50.4 bits (115), Expect = 5e-05
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +2
Query: 509 LVETAISNSRHKLQLYPYQVNSKLM 583
LVETAISN RHKLQLYPYQVNSKL+
Sbjct: 23 LVETAISNFRHKLQLYPYQVNSKLI 47
Score = 47.2 bits (107), Expect = 5e-04
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +3
Query: 444 MAFTNLVDTLANTIHRDTITAP 509
MAFTNLVDTLANTIHRD ITAP
Sbjct: 1 MAFTNLVDTLANTIHRDAITAP 22
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 49.6 bits (113), Expect = 9e-05
Identities = 20/47 (42%), Positives = 35/47 (74%)
Frame = +3
Query: 255 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 395
MAF +D L++T HRD+I+APL+++++S + L+L+PY V +L+
Sbjct: 1 MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELV 47
Score = 46.0 bits (104), Expect = 0.001
Identities = 18/45 (40%), Positives = 33/45 (73%)
Frame = +1
Query: 73 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 207
F +D L++T HRD+I+APL+++++S + L+L+PY V +L+
Sbjct: 3 FQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELV 47
Score = 44.4 bits (100), Expect = 0.003
Identities = 17/40 (42%), Positives = 30/40 (75%)
Frame = +2
Query: 638 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 757
F +D L++T HRD+I+APL+++++S + L+L+PY V
Sbjct: 3 FQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTV 42
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 47.6 bits (108), Expect = 3e-04
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = +3
Query: 255 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSK 389
MAF + + L++T+HRD + APL+E+ R L+LYP+ +N++
Sbjct: 1 MAFQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
Score = 44.0 bits (99), Expect = 0.004
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +1
Query: 73 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSK 201
F + + L++T+HRD + APL+E+ R L+LYP+ +N++
Sbjct: 3 FQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
Score = 43.6 bits (98), Expect = 0.006
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +2
Query: 638 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNS 763
F + + L++T+HRD + APL+E+ R L+LYP+ +N+
Sbjct: 3 FQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWAINA 44
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/42 (45%), Positives = 32/42 (76%)
Frame = +2
Query: 644 NLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSSS 769
++++TL++TIHRD I APL+ET S +R L+ +P+ V +S+
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAVPASA 67
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +1
Query: 79 NLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 192
++++TL++TIHRD I APL+ET S +R L+ +P+ V
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +3
Query: 267 NLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 380
++++TL++TIHRD I APL+ET S +R L+ +P+ V
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 82 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 192
LV+ L T+HRD + +PLVE A R LQLYPY +
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +3
Query: 270 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 380
LV+ L T+HRD + +PLVE A R LQLYPY +
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 647 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 757
LV+ L T+HRD + +PLVE A R LQLYPY +
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 41.9 bits (94), Expect = 0.017
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +3
Query: 255 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 395
MAF +D LA T HRD P++E+ + + R +Q YP+ + +L+
Sbjct: 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELL 47
Score = 38.3 bits (85), Expect = 0.21
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 73 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 207
F +D LA T HRD P++E+ + + R +Q YP+ + +L+
Sbjct: 3 FQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELL 47
Score = 36.3 bits (80), Expect = 0.85
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 638 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 757
F +D LA T HRD P++E+ + + R +Q YP+ +
Sbjct: 3 FQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSI 42
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 39.9 bits (89), Expect = 0.069
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 85 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 192
V++L T HRD ITAP+VE+ + R L+ YP+ +
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSI 49
Score = 39.9 bits (89), Expect = 0.069
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 273 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 380
V++L T HRD ITAP+VE+ + R L+ YP+ +
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSI 49
Score = 39.9 bits (89), Expect = 0.069
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 650 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 757
V++L T HRD ITAP+VE+ + R L+ YP+ +
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSI 49
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 39.5 bits (88), Expect = 0.091
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 255 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 374
MAF + ++ L +T HRDA T P++ + + R L LYP+
Sbjct: 1 MAFQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
Score = 35.9 bits (79), Expect = 1.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 73 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 186
F + ++ L +T HRDA T P++ + + R L LYP+
Sbjct: 3 FQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
Score = 35.9 bits (79), Expect = 1.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 638 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 751
F + ++ L +T HRDA T P++ + + R L LYP+
Sbjct: 3 FQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 36.3 bits (80), Expect = 0.85
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 91 TLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL 204
+LA T HRD I PL+E +R L YP+ + + L
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNL 134
Score = 36.3 bits (80), Expect = 0.85
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 279 TLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL 392
+LA T HRD I PL+E +R L YP+ + + L
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNL 134
Score = 35.1 bits (77), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 656 TLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 757
+LA T HRD I PL+E +R L YP+ +
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHI 130
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle
virus|Rep: Replicase - Dulcamara mottle virus
Length = 1742
Score = 36.3 bits (80), Expect = 0.85
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 255 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 374
MAF + ++ L +T HRDA++ P++ + + + L+ YP+
Sbjct: 1 MAFQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPW 40
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 35.9 bits (79), Expect = 1.1
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 255 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL 392
MAF +D LA+T H+D P++E+ + LQ YP+ V L
Sbjct: 1 MAFQLALDALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMVPQDL 46
>UniRef50_Q2UBZ7 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 110
Score = 33.9 bits (74), Expect = 4.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 291 CWRECRLNW*KPSKRRSQGQADFVGCLC 208
CWR+ ++ W P +R+ +G F GCLC
Sbjct: 84 CWRDSQIRWFLPDRRQLRGNCYF-GCLC 110
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 714,749,904
Number of Sequences: 1657284
Number of extensions: 13507617
Number of successful extensions: 28212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28198
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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