Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120421.Seq
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   5.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.5  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   9.6  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 622 RSQGQADFVGCLCHELGIYLIWVK 551
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 434 RSQGQADFVGCLCHELGIYLIWVK 363
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 246 RSQGQADFVGCLCHELGIYLIWVK 175
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 126 GSPSGNRHQQFPSQASTLPISGKFQAHDINNQ 221
           G P G    Q PSQ    P SG  Q   +  Q
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQLLQQ 80



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 314 GSPSGNRHQQFPSQASTLPISGKFQAHDINNQ 409
           G P G    Q PSQ    P SG  Q   +  Q
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQLLQQ 80


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 515 ETAISNSRHKLQLYPYQVNSKLMT*TTNK 601
           ET +++S    +LY +  N  L+  +TNK
Sbjct: 95  ETQVNDSLKVTRLYEFSDNELLVHISTNK 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,681
Number of Sequences: 438
Number of extensions: 3655
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)