Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120419.Seq
         (789 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24691 Cluster: Manirer-2 protein; n=12; Eumetazoa|Rep:...    59   1e-07
UniRef50_Q9N523 Cluster: Putative uncharacterized protein Y39A3A...    43   0.008
UniRef50_Q53H47 Cluster: Histone-lysine N-methyltransferase SETM...    43   0.008
UniRef50_UPI0000F30C2A Cluster: UPI0000F30C2A related cluster; n...    43   0.010
UniRef50_Q9NKW3 Cluster: Transposase; n=7; Obtectomera|Rep: Tran...    42   0.013
UniRef50_Q869A8 Cluster: Transposase; n=1; Meloidogyne chitwoodi...    40   0.071
UniRef50_UPI0000F3374E Cluster: UPI0000F3374E related cluster; n...    39   0.12 
UniRef50_Q6XL86 Cluster: Transposase; n=37; Protostomia|Rep: Tra...    39   0.12 
UniRef50_UPI0000F31B61 Cluster: UPI0000F31B61 related cluster; n...    39   0.16 
UniRef50_Q17312 Cluster: Mariner transposase; n=1; Ceratitis cap...    39   0.16 
UniRef50_Q13539 Cluster: Mariner transposase; n=2; Homo/Pan/Gori...    37   0.50 
UniRef50_UPI0000F331D1 Cluster: UPI0000F331D1 related cluster; n...    34   3.5  
UniRef50_Q45FI5 Cluster: Transposase; n=28; Pseudocoelomata|Rep:...    33   6.2  

>UniRef50_Q24691 Cluster: Manirer-2 protein; n=12; Eumetazoa|Rep:
           Manirer-2 protein - Dugesia tigrina (Planarian)
          Length = 365

 Score = 59.3 bits (137), Expect = 1e-07
 Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +1

Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG*KLNTSPKKKRN 432
           N RP  A  TV+KLQ+LGL+ LRH  YSP+L P D ++ QSLD FLSG    +S   K  
Sbjct: 244 NARPHSAKNTVAKLQQLGLETLRHPTYSPDLAPTDCHFFQSLDNFLSGKNFTSSGAVK-- 301

Query: 433 QGLQEVNSNRVTIY 474
              QE   +R +++
Sbjct: 302 TAFQEFIDSRESVF 315



 Score = 35.9 bits (79), Expect = 1.2
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = +2

Query: 41  RKRSSC*LDLASAPKAYAIPKSKIYS*NVIVTVWWSSAKIFN*KF 175
           RKRSS  LD    PK    PK K++   ++VTVWWSS  + +  F
Sbjct: 160 RKRSSQWLDPDEPPKH--CPKRKVHQKKLMVTVWWSSYGVIHYDF 202


>UniRef50_Q9N523 Cluster: Putative uncharacterized protein Y39A3A.1;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein Y39A3A.1 - Caenorhabditis
           elegans
          Length = 311

 Score = 43.2 bits (97), Expect = 0.008
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = +1

Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG*KLN 408
           N RP  A +T  KLQ LG++ L H  YSP+L P D++  +SL   L+G K +
Sbjct: 215 NARPHTALKTRQKLQTLGIEVLPHPPYSPDLAPTDYHLFRSLQNHLAGQKFH 266


>UniRef50_Q53H47 Cluster: Histone-lysine N-methyltransferase SETMAR
           (EC 2.1.1.43) (SET domain and mariner transposase fusion
           gene-containing protein) (Metnase) (Hsmar1) [Includes:
           Histone-lysine N-methyltransferase; Mariner transposase
           Hsmar1]; n=134; Eumetazoa|Rep: Histone-lysine
           N-methyltransferase SETMAR (EC 2.1.1.43) (SET domain and
           mariner transposase fusion gene-containing protein)
           (Metnase) (Hsmar1) [Includes: Histone-lysine
           N-methyltransferase; Mariner transposase Hsmar1] - Homo
           sapiens (Human)
          Length = 671

 Score = 43.2 bits (97), Expect = 0.008
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +1

Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
           N RP  A  T+ KL ELG + L H  YSP+LLP +++  + L+ FL G
Sbjct: 576 NARPHVAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQG 623



 Score = 35.9 bits (79), Expect = 1.2
 Identities = 18/45 (40%), Positives = 28/45 (62%)
 Frame = +2

Query: 41  RKRSSC*LDLASAPKAYAIPKSKIYS*NVIVTVWWSSAKIFN*KF 175
           R+RS+  LD   APK +  PK  ++   V+VT+WWS+A + +  F
Sbjct: 492 RRRSAQWLDQEEAPKHF--PKPILHPKKVMVTIWWSAAGLIHYSF 534


>UniRef50_UPI0000F30C2A Cluster: UPI0000F30C2A related cluster;
           n=20; Bos taurus|Rep: UPI0000F30C2A UniRef100 entry -
           Bos Taurus
          Length = 318

 Score = 42.7 bits (96), Expect = 0.010
 Identities = 23/64 (35%), Positives = 36/64 (56%)
 Frame = +1

Query: 283 VSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG*KLNTSPKKKRNQGLQEVNSNR 462
           + KL +L  K L HL YS  LLP D+++ ++LD FL G K   S ++  N   + ++S  
Sbjct: 234 LQKLNKLSYKVLPHLLYSHELLPIDYHFFKNLDNFLQG-KCFHSQQEAENAFQEFIDSLS 292

Query: 463 VTIY 474
           +  Y
Sbjct: 293 MDFY 296


>UniRef50_Q9NKW3 Cluster: Transposase; n=7; Obtectomera|Rep:
           Transposase - Antheraea pernyi (Chinese oak silk moth)
          Length = 165

 Score = 42.3 bits (95), Expect = 0.013
 Identities = 24/48 (50%), Positives = 29/48 (60%)
 Frame = +2

Query: 32  FFYRKRSSC*LDLASAPKAYAIPKSKIYS*NVIVTVWWSSAKIFN*KF 175
           F  RKRS+  LD  SAPK    PK K+    V+VTVWWSSA + +  F
Sbjct: 44  FDNRKRSASWLDPGSAPKQ--CPKRKLTPRKVMVTVWWSSAGVIHHSF 89


>UniRef50_Q869A8 Cluster: Transposase; n=1; Meloidogyne
           chitwoodi|Rep: Transposase - Meloidogyne chitwoodi
           (Columbia root-knot nematode)
          Length = 340

 Score = 39.9 bits (89), Expect = 0.071
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 280 TVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
           T  K+++LG   L H  YSP+L P D+Y    L  FL G
Sbjct: 253 TRKKIEDLGWDILEHSPYSPDLAPSDYYLFSPLKDFLRG 291


>UniRef50_UPI0000F3374E Cluster: UPI0000F3374E related cluster; n=2;
           Bos taurus|Rep: UPI0000F3374E UniRef100 entry - Bos
           Taurus
          Length = 300

 Score = 39.1 bits (87), Expect = 0.12
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 286 SKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
           SK+ EL  KF   L YSP L P ++++ + LD FL G
Sbjct: 224 SKVDELPRKFCLRLPYSPELSPTNYHFFKHLDNFLQG 260


>UniRef50_Q6XL86 Cluster: Transposase; n=37; Protostomia|Rep:
           Transposase - Forficula auricularia (European earwig)
          Length = 345

 Score = 39.1 bits (87), Expect = 0.12
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +1

Query: 280 TVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG*KLNTSPKKK 426
           T  KL ELG   L H  YSP+L P D++  +SL   L+G   N     K
Sbjct: 255 TRQKLLELGWDVLPHPPYSPDLAPSDYFLFRSLQNSLNGKNFNNDDDVK 303


>UniRef50_UPI0000F31B61 Cluster: UPI0000F31B61 related cluster; n=1;
           Bos taurus|Rep: UPI0000F31B61 UniRef100 entry - Bos
           Taurus
          Length = 303

 Score = 38.7 bits (86), Expect = 0.16
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 283 VSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
           + KL ELG + L H  YS +LLP D+++ +  D F  G
Sbjct: 247 LQKLNELGFEVLPHPPYSSDLLPIDYHFFKHFDNFFQG 284


>UniRef50_Q17312 Cluster: Mariner transposase; n=1; Ceratitis
           capitata|Rep: Mariner transposase - Ceratitis capitata
           (Mediterranean fruit fly)
          Length = 338

 Score = 38.7 bits (86), Expect = 0.16
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +1

Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG*K 402
           N RP  A  T++KL+E+  + + H  YSP++ P D++  +SL   L+G K
Sbjct: 242 NARPHVAKPTLAKLKEMNWEIMPHSPYSPDIAPSDYHLFRSLQNNLNGKK 291


>UniRef50_Q13539 Cluster: Mariner transposase; n=2; Homo/Pan/Gorilla
           group|Rep: Mariner transposase - Homo sapiens (Human)
          Length = 351

 Score = 37.1 bits (82), Expect = 0.50
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 277 QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
           QT + L+E   + +RH  YSP+L P DF+   +L K L G
Sbjct: 263 QTRAILREFRWEIIRHPPYSPDLAPSDFFLFPNLKKSLKG 302


>UniRef50_UPI0000F331D1 Cluster: UPI0000F331D1 related cluster; n=1;
           Bos taurus|Rep: UPI0000F331D1 UniRef100 entry - Bos
           Taurus
          Length = 296

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 280 TVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKF 387
           T+ KL ELG   L H  +SP+L P ++++ + L+ F
Sbjct: 208 TLQKLNELGYTVLPHPPHSPDLSPTNYHFFKHLNNF 243


>UniRef50_Q45FI5 Cluster: Transposase; n=28; Pseudocoelomata|Rep:
           Transposase - Adineta vaga
          Length = 345

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
 Frame = +1

Query: 172 IHHSSFPNVTCITTDVYCVRA--------GHNDGEA---TNLRP--A*QTVSKLQELGLK 312
           IH    PN   IT D+YC +         G  D       N RP  A     KL +LG  
Sbjct: 208 IHWEVLPNGYTITADLYCQQLDRVAEKLKGKQDRVYFLHDNARPHVAKSAREKLLKLGWI 267

Query: 313 FLRHLAYSPNLLPKDFYYIQSLDKFL 390
            + H  YSP+L P D++  +SL   L
Sbjct: 268 TIPHPPYSPDLAPTDYHLFRSLSNDL 293


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,427,751
Number of Sequences: 1657284
Number of extensions: 14256156
Number of successful extensions: 28925
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 28078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28923
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)