Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120419.Seq
         (789 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    25   0.52 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.9  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   8.5  

>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 285 LQATRARVEIFASFSILSKPFAERLLLYSKFG*ILVRIKTQYFP 416
           LQ  R R E+    ++L K    R         ++V + T YFP
Sbjct: 234 LQCGRVRSEVVKILNVLKKIALRRQTTNGDLDELIVTLSTHYFP 277


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 101  WGLRRL*VLKPGLINTTTAYDKKKINKKESVL 6
            WG R + V+     N     ++KK  KK+ VL
Sbjct: 1032 WGTREVTVVPKPDPNAVQKIEEKKPEKKDKVL 1063


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 101  WGLRRL*VLKPGLINTTTAYDKKKINKKESVL 6
            WG R + V+     N     ++KK  KK+ VL
Sbjct: 1032 WGTREVTVVPKPDPNAVQKIEEKKPEKKDKVL 1063


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 202 CITTDVYCVRAGHNDGEATNL 264
           CIT   YC  +G N    T++
Sbjct: 247 CITQFYYCYDSGFNSDNLTDV 267


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,724
Number of Sequences: 336
Number of extensions: 3881
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)