Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120419.Seq
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    29   1.0  
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces...    28   1.8  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    27   2.3  
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    27   4.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   5.4  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   9.4  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   9.4  

>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 154 QNIQLKIHHSSFPNVTCITTDVY 222
           Q I +K H +SFP  T + TD+Y
Sbjct: 35  QTINVKHHENSFPEQTWVVTDLY 57


>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 350 RKTSTIFKVWINSCQDKNSILPRKRKEIKVFKR 448
           +K   I KV  N  ++  ++L +KRKE K FK+
Sbjct: 200 KKQKHIEKVIENEARESGTVLAKKRKERKQFKK 232


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 343 LLPKDFYYIQSLDKFLSG 396
           L PKDFY+I  L K++SG
Sbjct: 354 LPPKDFYFINLLFKYISG 371


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 172 FLIEYFGTRPPNSDYDILRVNFRFGDCVGF 83
           FL+E F   PPN++Y I   + R GD + F
Sbjct: 133 FLVEPFVPHPPNTEYYININSVREGDWILF 162


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -3

Query: 490 TLSEISKS*HDLNLPLEDLDFFSFSGKY*VFILTRIYPNFEYSRSLSAKGLESMLNDAKI 311
           T+ ++ K   ++ L +E L      G   +   T     + +SRS+  K +  +LN+AKI
Sbjct: 729 TVKKLCKDTDNIELNVEALQSALREG---IIYATSSDDTYTFSRSIYVKAMRDLLNEAKI 785

Query: 310 STL 302
             +
Sbjct: 786 QIM 788


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 172 IHHSSFPNVTCITTDVYCVRAGHNDGEATNL 264
           IHHS   N  C  T + C     ND ++ N+
Sbjct: 377 IHHSPSRNKKCRVTGLQCASIIPNDSKSDNV 407


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 177 PQLLPKCHLYYYGCVLCKGWTQ*RGSHES 263
           P L P  ++Y Y   LCK      GS ES
Sbjct: 331 PTLNPDAYIYIYSYFLCKDTVLIMGSSES 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,496
Number of Sequences: 5004
Number of extensions: 64564
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)