Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120419.Seq
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778...    28   7.4  
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70...    28   9.7  
01_01_0088 + 688792-691441,691629-693013                               28   9.7  

>02_05_0936 -
           32875479-32875573,32875794-32876028,32877752-32877848,
           32878863-32878927,32879506-32879571,32879735-32879842,
           32880169-32880303,32880582-32880647,32881172-32881222,
           32881312-32881386,32881834-32881896,32882694-32882783,
           32882903-32883100,32883189-32883315,32883482-32884100,
           32884228-32884265,32884651-32884718,32885056-32885100,
           32885243-32885302,32885510-32885593,32885677-32885868,
           32887361-32887663
          Length = 959

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 93  QSPNRKFTLKMS*SLFGGLVPKYS-IKNSPQLLPKCHLYYYGCVLCKG 233
           QS N K +L +  S  G    +       P   PKCH+ +  C+L  G
Sbjct: 769 QSNNDKVSLLLRESFIGSFPTRERPFMKRPCRYPKCHVLFMACILVHG 816


>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
            708462-708702,708783-708857,708932-709017,709451-709523,
            709637-709961,710092-711750,711938-713322
          Length = 1788

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 280  TVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG*KLNTS-PKKKRNQGLQEVNS 456
            TVSKL  L    L+    S N LP DF  + +L  FL+  + +++ P+  + + LQE+  
Sbjct: 1144 TVSKLYHLKFLDLKSWGGSNNNLPNDFNRLINLRHFLAKKEFHSNVPEVGKMKCLQELKE 1203

Query: 457  NRV 465
              V
Sbjct: 1204 FHV 1206


>01_01_0088 + 688792-691441,691629-693013
          Length = 1344

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 280 TVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG*KLNTS-PKKKRNQGLQEVNS 456
           TVSKL  L    L+    S N LP DF  + +L  FL+  + +++ P+  + + LQE+  
Sbjct: 700 TVSKLYHLKFLDLKSWGGSNNNLPNDFNRLINLRHFLAKKEFHSNVPEVGKMKCLQELKE 759

Query: 457 NRV 465
             V
Sbjct: 760 FHV 762


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,745,066
Number of Sequences: 37544
Number of extensions: 372031
Number of successful extensions: 722
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)