Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120419.Seq
(789 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52077-1|AAC52010.1| 343|Homo sapiens mariner transposase protein. 47 9e-05
U80776-1|AAC52012.1| 671|Homo sapiens unknown protein. 43 0.001
DQ341316-1|ABC72087.1| 344|Homo sapiens SETMAR protein. 43 0.001
BC008931-1|AAH08931.2| 429|Homo sapiens SETMAR protein protein. 43 0.001
AY952295-1|AAY29570.1| 671|Homo sapiens metnase protein. 43 0.001
AK222734-1|BAD96454.1| 671|Homo sapiens SET domain and mariner ... 43 0.001
AF054989-1|AAC09350.1| 671|Homo sapiens unknown protein. 43 0.001
U49974-1|AAC52011.1| 351|Homo sapiens mariner transposase protein. 37 0.072
>U52077-1|AAC52010.1| 343|Homo sapiens mariner transposase protein.
Length = 343
Score = 46.8 bits (106), Expect = 9e-05
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG*KLNTSPKKKRN 432
N RP A T+ KL ELG + L H YSP+L P D+++ + LD FL G + + ++
Sbjct: 248 NARPHVAQPTLQKLNELGYEVLPHPPYSPDLSPTDYHFFKHLDNFLQGKRFHN--QQDAE 305
Query: 433 QGLQEVNSNRVT 468
QE +R T
Sbjct: 306 NAFQEFVESRST 317
Score = 35.9 bits (79), Expect = 0.17
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 41 RKRSSC*LDLASAPKAYAIPKSKIYS*NVIVTVWWSSAKIFN*KF 175
R+R + LD APK + PK ++ V+VTVWWS+A + + F
Sbjct: 164 RRRPAQWLDREEAPKHF--PKPNLHQKKVMVTVWWSAAGLIHYSF 206
>U80776-1|AAC52012.1| 671|Homo sapiens unknown protein.
Length = 671
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
N RP A T+ KL ELG + L H YSP+LLP +++ + L+ FL G
Sbjct: 576 NARPHVAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQG 623
Score = 35.9 bits (79), Expect = 0.17
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +2
Query: 41 RKRSSC*LDLASAPKAYAIPKSKIYS*NVIVTVWWSSAKIFN*KF 175
R+RS+ LD APK + PK ++ V+VT+WWS+A + + F
Sbjct: 492 RRRSAQWLDQEEAPKHF--PKPILHPKKVMVTIWWSAAGLIHYSF 534
>DQ341316-1|ABC72087.1| 344|Homo sapiens SETMAR protein.
Length = 344
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
N RP A T+ KL ELG + L H YSP+LLP +++ + L+ FL G
Sbjct: 249 NARPHVAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQG 296
Score = 35.9 bits (79), Expect = 0.17
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +2
Query: 41 RKRSSC*LDLASAPKAYAIPKSKIYS*NVIVTVWWSSAKIFN*KF 175
R+RS+ LD APK + PK ++ V+VT+WWS+A + + F
Sbjct: 165 RRRSAQWLDQEEAPKHF--PKPILHPKKVMVTIWWSAAGLIHYSF 207
>BC008931-1|AAH08931.2| 429|Homo sapiens SETMAR protein protein.
Length = 429
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
N RP A T+ KL ELG + L H YSP+LLP +++ + L+ FL G
Sbjct: 334 NARPHVAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQG 381
Score = 35.9 bits (79), Expect = 0.17
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +2
Query: 41 RKRSSC*LDLASAPKAYAIPKSKIYS*NVIVTVWWSSAKIFN*KF 175
R+RS+ LD APK + PK ++ V+VT+WWS+A + + F
Sbjct: 250 RRRSAQWLDQEEAPKHF--PKPILHPKKVMVTIWWSAAGLIHYSF 292
>AY952295-1|AAY29570.1| 671|Homo sapiens metnase protein.
Length = 671
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
N RP A T+ KL ELG + L H YSP+LLP +++ + L+ FL G
Sbjct: 576 NARPHVAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQG 623
Score = 35.9 bits (79), Expect = 0.17
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +2
Query: 41 RKRSSC*LDLASAPKAYAIPKSKIYS*NVIVTVWWSSAKIFN*KF 175
R+RS+ LD APK + PK ++ V+VT+WWS+A + + F
Sbjct: 492 RRRSAQWLDQEEAPKHF--PKPILHPKKVMVTIWWSAAGLIHYSF 534
>AK222734-1|BAD96454.1| 671|Homo sapiens SET domain and mariner
transposase fusion gene variant protein.
Length = 671
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
N RP A T+ KL ELG + L H YSP+LLP +++ + L+ FL G
Sbjct: 576 NARPHVAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQG 623
Score = 35.9 bits (79), Expect = 0.17
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +2
Query: 41 RKRSSC*LDLASAPKAYAIPKSKIYS*NVIVTVWWSSAKIFN*KF 175
R+RS+ LD APK + PK ++ V+VT+WWS+A + + F
Sbjct: 492 RRRSAQWLDQEEAPKHF--PKPILHPKKVMVTIWWSAAGLIHYSF 534
>AF054989-1|AAC09350.1| 671|Homo sapiens unknown protein.
Length = 671
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
N RP A T+ KL ELG + L H YSP+LLP +++ + L+ FL G
Sbjct: 576 NARPHVAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQG 623
Score = 35.9 bits (79), Expect = 0.17
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +2
Query: 41 RKRSSC*LDLASAPKAYAIPKSKIYS*NVIVTVWWSSAKIFN*KF 175
R+RS+ LD APK + PK ++ V+VT+WWS+A + + F
Sbjct: 492 RRRSAQWLDQEEAPKHF--PKPILHPKKVMVTIWWSAAGLIHYSF 534
>U49974-1|AAC52011.1| 351|Homo sapiens mariner transposase protein.
Length = 351
Score = 37.1 bits (82), Expect = 0.072
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 277 QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG 396
QT + L+E + +RH YSP+L P DF+ +L K L G
Sbjct: 263 QTRAILREFRWEIIRHPPYSPDLAPSDFFLFPNLKKSLKG 302
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,197,449
Number of Sequences: 237096
Number of extensions: 2119220
Number of successful extensions: 3219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3219
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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