Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120419.Seq
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    43   2e-04
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    42   5e-04
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    42   5e-04
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    42   5e-04
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    31   1.2  

>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = +1

Query: 259 NLRP--A*QTVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG*KLN 408
           N RP  A +T  KLQ LG++ L H  YSP+L P D++  +SL   L+G K +
Sbjct: 215 NARPHTALKTRQKLQTLGIEVLPHPPYSPDLAPTDYHLFRSLQNHLAGQKFH 266


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
 Frame = +1

Query: 160 IQLKIHHSSFPNVTCITTDVYCVR----AGHNDGEAT-------NLRP--A*QTVSKLQE 300
           +Q  +H    P    IT D YC +    A   +G+         N RP  A +T  KLQ+
Sbjct: 199 VQGPVHWELLPTNKTITADYYCAQLDRVAEKTNGKYEKLYFLHDNARPHVAKKTFQKLQD 258

Query: 301 LGLKFLRHLAYSPNLLPKDFYYIQSLDKFL 390
           LG   L H  YSP+L P D++   SL  ++
Sbjct: 259 LGWTVLPHPPYSPDLAPTDYHLFLSLSDYM 288


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
 Frame = +1

Query: 160 IQLKIHHSSFPNVTCITTDVYCVR----AGHNDGEAT-------NLRP--A*QTVSKLQE 300
           +Q  +H    P    IT D YC +    A   +G+         N RP  A +T  KLQ+
Sbjct: 174 VQGPVHWELLPTNKTITADYYCAQLDRVAEKTNGKYEKLYFLHDNARPHVAKKTFQKLQD 233

Query: 301 LGLKFLRHLAYSPNLLPKDFYYIQSLDKFL 390
           LG   L H  YSP+L P D++   SL  ++
Sbjct: 234 LGWTVLPHPPYSPDLAPTDYHLFLSLSDYM 263


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
 Frame = +1

Query: 160 IQLKIHHSSFPNVTCITTDVYCVR----AGHNDGEAT-------NLRP--A*QTVSKLQE 300
           +Q  +H    P    IT D YC +    A   +G+         N RP  A +T  KLQ+
Sbjct: 199 VQGPVHWELLPTNKTITADYYCAQLDRVAEKTNGKYEKLYFLHDNARPHVAKKTFQKLQD 258

Query: 301 LGLKFLRHLAYSPNLLPKDFYYIQSLDKFL 390
           LG   L H  YSP+L P D++   SL  ++
Sbjct: 259 LGWTVLPHPPYSPDLAPTDYHLFLSLSDYM 288


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 187 RSCGEFLIEYFGTRPPNSDYDILRVNFRFGDC 92
           +SCG F     GTR PN+DY +L  N + G C
Sbjct: 873 QSCGCFAA---GTRRPNNDYTLLECNQQDGQC 901


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,872,258
Number of Sequences: 27780
Number of extensions: 348981
Number of successful extensions: 717
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)