Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120419.Seq
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    39   6e-05
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   7.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.9  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 38.7 bits (86), Expect = 6e-05
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +1

Query: 280 TVSKLQELGLKFLRHLAYSPNLLPKDFYYIQSLDKFLSG*KLN 408
           T  KL ELG   L H  YSP+L P D++  +SL   L+G   N
Sbjct: 255 TRQKLLELGWDVLPHPPYSPDLAPSDYFLFRSLQNSLNGKNFN 297


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 689 TVNRARLFCRNKS*PSLQGMLYW 621
           T+   R FCRN   P++  +L+W
Sbjct: 27  TMYLVRAFCRNCIHPTVFSVLFW 49


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 689 TVNRARLFCRNKS*PSLQGMLYW 621
           T+   R FCRN   P++  +L+W
Sbjct: 475 TMYLVRAFCRNCIHPTVFSVLFW 497


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 160 YFGTRPPNSDYDILRVNFRFGD 95
           YF   P   DY+I  +NF++G+
Sbjct: 234 YFMPDPLAGDYNIGGLNFQWGE 255


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 58  TRRPLTIKKRLIKKNP 11
           T+RPL  + +LIK++P
Sbjct: 131 TKRPLPNESQLIKRHP 146


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 150 VPKYSIKNSPQLLPKCHLYYYGCVLCKGWT 239
           VPK+S   SP+L P  +  ++    C G T
Sbjct: 217 VPKHSKTKSPKLRPYPNWEWHTVGNCDGLT 246


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 184  SCGEFLIEYFGTRPPNSDYDILRVNFRFGDCV 89
            SCG   +      PP+S    L VN  + D V
Sbjct: 1273 SCGTVSVPQQQQLPPSSPQPRLTVNHAYRDAV 1304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,636
Number of Sequences: 438
Number of extensions: 4269
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)