BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120419.Seq (789 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 4.6 >At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to unknown protein (pir||T00468); contains Pfam PF00684 : DnaJ central domain (4 repeats) Length = 315 Score = 28.7 bits (61), Expect = 4.6 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Frame = +2 Query: 266 GQHNRRSPSYKS*G*NFCVI--*HTLQTFCRKTSTIFKVWINSCQDKNSILPRKRKEIKV 439 G +NR PS + NFC+I T+Q F + + I S ++K +L + + ++V Sbjct: 54 GSNNRPPPSGDTVPNNFCIIEGSETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRV 113 Query: 440 FKR*IQIVLRFTDFTECEDTQRP 508 +R I+ V + +E E T+ P Sbjct: 114 QQR-IKSVKAINEDSELEATEMP 135 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,841,878 Number of Sequences: 28952 Number of extensions: 325648 Number of successful extensions: 708 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 694 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 708 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1775300800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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