Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120418.Seq
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.2  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   3.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   4.2  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 281 LGHLRYSLTMYRPSQTP 231
           LG LRY+   Y+PSQ P
Sbjct: 424 LGILRYAKGPYQPSQAP 440


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 281 LGHLRYSLTMYRPSQTP 231
           LG LRY+   Y+PSQ P
Sbjct: 424 LGILRYAKGPYQPSQAP 440


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 45  SSLKNHYFHCFITYSVGRK 101
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 120 YYRPRTASAQPSK 82
           YYRPRT+  +P +
Sbjct: 232 YYRPRTSRTEPPR 244


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 275 HLRYSLTMYRPSQTPRLAVSSNRITREF*TATS 177
           H R++ T +    TPR   +S+R  + F T  S
Sbjct: 279 HTRHTTTSHNTRGTPRTTPASSRCGQLFNTEES 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,587
Number of Sequences: 336
Number of extensions: 3653
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)