Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120418.Seq
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    29   4.2  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   5.6  

>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 167 WRKRSSPFKTPA*SGSRTLPGGEFDWGGTLSKNNAGVLR-PAQRGQKPRVEQKGKS 331
           W+K     KTPA SG+ T         GT  ++ AGV   P+ R Q       GK+
Sbjct: 611 WKKFRQTQKTPAPSGASTSGASTSKPSGTSPESGAGVCTGPSTRSQSITSVASGKT 666


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 149 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 15
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,756,080
Number of Sequences: 27780
Number of extensions: 360336
Number of successful extensions: 956
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)