Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120417.Seq
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   1.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   2.3  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   6.9  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   9.1  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   9.1  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   9.1  

>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 11  DLAEANRSLILF----ANEMIVARRDAETARQDCENARRETAQLAN 136
           DL +ANR L       ANE +  +RD    R+D  + +R+  QL N
Sbjct: 318 DLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRKKIQLRN 363


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 601 FIYYALLKNSIYYALRKHFAGHPMLKRLTTYKIFIARCANCSCAQFV 461
           F  Y L KN++ ++  KHF   P+  R  T  I      N  C   V
Sbjct: 575 FKSYVLFKNNLVFSETKHFGTTPVSFRRFTMNIGTYIICNNDCPHMV 621


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 41  LFANEMIVARRDAETARQDCE 103
           +FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 174 GLAITSCAMSAMRLASCAVSRRAFSQS 94
           GL+  + A   M  A C++S  AF+QS
Sbjct: 114 GLSFNTLAWLTMGTALCSISANAFNQS 140


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +1

Query: 325 SMNVLNKVKEAIPRNKFKAKHNR----ITLLEDYTRE--ELMNVIGSTMTDRQIARMNSL 486
           ++N  + ++E +P  K   K N     IT    Y      L N++GST++    AR +  
Sbjct: 199 NVNSQHLMRERVPGEKILPKSNERNILITSALPYVNNVPHLGNIVGSTLSADVFARYHRA 258

Query: 487 RN 492
           RN
Sbjct: 259 RN 260


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 194 HSLAVCNVGNNEFAFL 241
           +SL + N+GNNEF F+
Sbjct: 7   NSLIIKNIGNNEFKFV 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,744
Number of Sequences: 5004
Number of extensions: 42302
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)