Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120417.Seq
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    29   2.3  
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    29   2.3  
10_01_0021 - 281130-281224,281758-281842,281916-281971,282408-28...    28   7.1  
02_05_0680 - 30824652-30826010                                         28   7.1  
02_05_0612 + 30348495-30348995,30349679-30350023                       28   7.1  
02_04_0310 - 21932418-21932531,21932627-21932869                       27   9.4  

>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 40  FVCQRNDCGSTRR*NGSARLRKRAP 114
           FVC R  C   RR  G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454


>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
            4066416-4066933,4067435-4067694,4068089-4068594,
            4068667-4071319
          Length = 2107

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +2

Query: 2    ANADLAEANRSLILFANEMIVARRDAETARQDCENA---RRETAQLANRMADIAQDVIAK 172
            A+  L EAN      +N  + +  D     + C NA     E   L  ++A+  Q +IAK
Sbjct: 1818 ASGLLEEANLFAPSLSNAYLPSEHDENHIEEKCSNATLLEDEDTYLRQKLANNVQKIIAK 1877

Query: 173  PSNPQLC 193
             S   LC
Sbjct: 1878 GSANNLC 1884


>10_01_0021 -
           281130-281224,281758-281842,281916-281971,282408-282584,
           282686-282805,283004-283096,283548-283668,283772-283804,
           284001-284082,286600-286739
          Length = 333

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 361 PRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARM 477
           P N  +  HNR ++L++     L N  G   T RQ+  M
Sbjct: 99  PPNAIQHLHNRQSMLQEVADLNLSNAYGEVCTPRQLVIM 137


>02_05_0680 - 30824652-30826010
          Length = 452

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 98  CENARRETAQLANRMADIAQDVIAKPSNPQ 187
           C+N   E    AN M D   +++AKP +PQ
Sbjct: 257 CDNQCLEAMSKANAMYDALVNLVAKPVSPQ 286


>02_05_0612 + 30348495-30348995,30349679-30350023
          Length = 281

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 261 QRCFCGRRNANSLLPTLHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRA 106
           Q   C R NA          R W +  +L +A+ +  M A  LA C+V  R+
Sbjct: 227 QAVLCFRCNACKASALDTVRRNWRAVAVLNVAVLAILMLAYSLACCSVRDRS 278


>02_04_0310 - 21932418-21932531,21932627-21932869
          Length = 118

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +1

Query: 1   GQRRFGGSQPIAHFVCQRNDCGSTRR*NGSARLRKRAPRNG--AAGQPHGGHCARRDSQT 174
           G R  GG  P    + +R+  G        AR R+ A R G  AAGQ H G     +S T
Sbjct: 5   GGRPSGGGGPALQRL-RRHAAGKVAS-RSLARCREGARRRGRQAAGQRHSGRQGSNESTT 62

Query: 175 Q-QP 183
           Q QP
Sbjct: 63  QSQP 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,136,122
Number of Sequences: 37544
Number of extensions: 313757
Number of successful extensions: 1053
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)