Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120417.Seq
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          31   0.59 
SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5)                 30   1.4  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)                 29   2.4  
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)                 29   3.2  
SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)                       29   4.2  
SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_15146| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_7588| Best HMM Match : DcpS (HMM E-Value=0)                         28   7.3  
SB_56561| Best HMM Match : Hom_end_hint (HMM E-Value=4.1)              27   9.7  
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
 Frame = -2

Query: 288 RTQSFQAAAQRC-FCGRRNANSLLPTLHTARLWHSCGLLGLAITSCAMSAMRLASCAVSR 112
           R  SF A  +R  +C   +  +LL        + SC +L   ++ C +S   L+ C VS 
Sbjct: 225 RVLSFIALLRRAVYCCAMSCRALL-----CCAFFSCAVLYRVVSCCVVSCRVLSCCIVSC 279

Query: 111 RAFSQSCRAVSASRRATIISLANKMSDRLASAK 13
           R    SCR +S    + ++ L   +S R+ S +
Sbjct: 280 RVV--SCRVLSCCIVSCLVVLYRVVSCRVVSCR 310


>SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5)
          Length = 235

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 237 NANSLLPTLHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATI 58
           +   +LP+L    L H CG  G    SC  SA  + + ++  R  + +   V+ S  A  
Sbjct: 24  DGKEVLPSLPVLSLTHGCGCSG-GSKSCCGSASSIEASSIVTRTHASTAFMVAGSNNAEW 82

Query: 57  IS 52
           IS
Sbjct: 83  IS 84


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 47   ANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLC 193
            A+ ++V R DAE   +     RR     +N    I  ++ +K +NP LC
Sbjct: 3361 ASSLVVVREDAEPVAR---RRRRRAVDTSNTTTPITTNLTSKVTNPSLC 3406


>SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)
          Length = 510

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +2

Query: 11  DLAEANRSLI-LFANEMIVARRDAETARQDCENARRETAQLAN 136
           D+ E+ RS I LFA++ I  R     +R+DCE  RR+ ++LA+
Sbjct: 261 DIQESVRSEIRLFADDCICYR--TIRSREDCEELRRDISRLAS 301


>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
          Length = 1213

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 189 SCG-LLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVS 79
           SC  LLGL ++    SAM +  C +S R   Q CR +S
Sbjct: 465 SCSSLLGLELSDELESAMWICPCTISIRTGMQRCRWIS 502


>SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)
          Length = 208

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +2

Query: 11  DLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQL 190
           DLA+    +   AN++   R        D  + R + +Q+AN +AD   D I++ SN   
Sbjct: 113 DLADNRPDISQVANDLDNNRPHKSRVANDLADNRSDISQVANDLADNRPD-ISQVSNNLA 171

Query: 191 CHSLAVCNVGNN 226
            + L    V NN
Sbjct: 172 DNRLEELQVANN 183



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 47  ANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCNVGNN 226
           AN++   R D      D +N R   +++AN +AD   D I++ +N    +   +  V NN
Sbjct: 111 ANDLADNRPDISQVANDLDNNRPHKSRVANDLADNRSD-ISQVANDLADNRPDISQVSNN 169



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +2

Query: 11  DLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQL 190
           DLA+    +   AN++   R D      +  + R E  Q+AN + D   D I+   NP L
Sbjct: 141 DLADNRSDISQVANDLADNRPDISQVSNNLADNRLEELQVANNLTDNRPD-ISLHVNPAL 199

Query: 191 CHSLAVC 211
                 C
Sbjct: 200 SEVQPSC 206


>SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +2

Query: 11  DLAEANRSLI-LFANEMIVARRDAETARQDCENARRETAQLAN 136
           D+ E+ RS I LFA++ I  R     +R+DCE  +R+ ++LA+
Sbjct: 662 DIQESVRSEIRLFADDCICYR--TIRSREDCEELQRDISRLAS 702


>SB_15146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 258 RCFCGRRNANSLLPTLHTARL-WHSCGLLGL 169
           R FC   N NS +P+   A + W +CGL+GL
Sbjct: 59  RMFCHISN-NSRIPSYEQATIAWATCGLMGL 88


>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
          Length = 446

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 304 SSDYVPNSMNVLNKVKEAIPRNKFKAKHNRITLLEDY 414
           + +++P   N+LNK ++AI R K+   H+++ +   Y
Sbjct: 342 NEEHIPLLKNILNKGRDAI-RTKYNVPHSQLRIYVHY 377


>SB_56561| Best HMM Match : Hom_end_hint (HMM E-Value=4.1)
          Length = 390

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +2

Query: 62  VARRDAETARQDCENARRETAQLANRM------ADIAQDVIAKPSNPQLCHSLAVCNVGN 223
           V   D E     CE      A++A ++      AD  + ++ K + PQ CH + V  V +
Sbjct: 108 VLEADIEDEEAVCEAVNDRIAKIAKKLWGSSIAADRLKPLLTKHAKPQNCHEITVPRVNS 167

Query: 224 NEFA 235
             +A
Sbjct: 168 EIWA 171


>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 14  LAEANRSLILFANEMIVARRDAETARQDCENARR 115
           L EA + L     + I  R+D ++  +DCEN  R
Sbjct: 13  LLEAQQELATLQRQYICLRKDKKSYTEDCENVIR 46


>SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 29  RSLILFANEMIVARRDAETARQDCE-NARRETAQLANRMADIAQDVIAKPSN 181
           RS    AN  I ++RD  T++ DC+ +A  +     N  ++  + +I K  N
Sbjct: 55  RSTSSLANNTIPSKRDKRTSKHDCDGSANNKRTNKHNDGSNNKRTIITKHDN 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,540
Number of Sequences: 59808
Number of extensions: 348581
Number of successful extensions: 930
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)