Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120417.Seq
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33880.1 68414.m04200 avirulence-responsive family protein / ...    29   2.6  
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)            29   3.4  
At5g35695.1 68418.m04268 hypothetical protein                          28   6.0  
At2g20370.1 68415.m02378 exostosin family protein contains Pfam ...    28   6.0  
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo...    27   7.9  
At1g31400.1 68414.m03845 meprin and TRAF homology domain-contain...    27   7.9  

>At1g33880.1 68414.m04200 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
           Pfam PF04548: AIG1 family;
          Length = 234

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 271 LKRLGSNDVIFSSDYVPNSM-NVLNKVKEAIPRNKFK-AKHNRITLLEDYTREELMNVIG 444
           +K  G  D+  S DY+   + N L   +E +    F  +  NRIT  E+Y    L  + G
Sbjct: 74  IKTPGMFDLSVSEDYISKEIINCLTLAEEGVHAVLFVLSMKNRITQEEEYALNTLQRIFG 133

Query: 445 STMTD 459
           S + +
Sbjct: 134 SKILE 138


>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
          Length = 134

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 235 VSAPAKTSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFK 378
           V AP    +  +LKRL   D++   + VP    ++  +++A  +NK++
Sbjct: 38  VDAPDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWE 85


>At5g35695.1 68418.m04268 hypothetical protein
          Length = 211

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 163 HVLRNVRHAVGQLRRFAARVFAILPSRFSVASSHNHFVGKQ 41
           H L N+RH    LR    R+F I  SRF++  S   F  K+
Sbjct: 87  HELFNLRHV--SLRNVIERIFGIFKSRFAIFKSAPPFSYKK 125


>At2g20370.1 68415.m02378 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 619

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 392 RLCLALNLLRGMASFTLFSTFMELGT*SLLKMTSLEPNRFRLRPSDV 252
           R+CL + L     +  L+  F+ LGT ++ K   L+P+  + +PS V
Sbjct: 31  RICLLVALSLFFWALLLYFHFVVLGTSNIDKQLQLQPSYAQSQPSSV 77


>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
           ribosomal protein L14 - Human,PIR3:JC5954
          Length = 134

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 235 VSAPAKTSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFK 378
           V AP    +  + KRL   D++   + VP    ++  +++A  +NK++
Sbjct: 38  VDAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWE 85


>At1g31400.1 68414.m03845 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 278

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 569 ILCITKALCWSPNA*TLDDI*NFYCAL 489
           +LC+T+ LC SP+  +  D+ N +C L
Sbjct: 197 LLCLTELLCQSPHKLSNVDLANAHCTL 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,546,296
Number of Sequences: 28952
Number of extensions: 230298
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)