Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120416X.Seq
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 1.8
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514... 29 2.3
03_06_0170 - 32128619-32129647 29 2.3
03_06_0163 - 32105234-32105977 29 2.3
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 28 4.1
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 4.1
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 4.1
12_02_0399 - 18600444-18600591,18600626-18601656 28 5.4
10_08_0860 - 21136509-21136997 28 5.4
04_01_0301 + 4016588-4016627,4016715-4018837 28 5.4
12_02_0757 + 22845825-22846032,22848331-22848498,22848929-228494... 27 7.2
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358 27 7.2
04_03_0594 - 17733827-17735085,17735576-17735642,17736379-177364... 27 7.2
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 27 7.2
05_02_0044 + 5968289-5968448,5968551-5968687 27 9.5
04_04_0085 + 22624918-22625035,22625225-22625421,22625460-22625597 27 9.5
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -2
Query: 247 KTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHK 77
K E+ KK E ++ I + IEAKD+ + + + + E ++ +E++ K
Sbjct: 1700 KIEDTDKKIEHLQNAIIKLEGDIEAKDISLEAAREENDTIRKSLAEAQEKNEELLRK 1756
>12_01_0624 -
5137096-5137310,5137923-5138380,5138428-5140070,
5140245-5140462,5140589-5140757,5141249-5141305
Length = 919
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 402 EWLLEEVIPHVLCTGKY-DPAIKQQEEKNKQLVTKLIATFTEHTNALQAVGRKKPRNFLK 226
EW +V+ H GK +P +E N+ ++ LI ++ VGR ++ K
Sbjct: 67 EWGKYQVL-HGFVNGKSNEPEELGKEYYNELIIRNLIQAMPNSEWSMHDVGRSFCQHLAK 125
Query: 225 SKSLSNASSQLRTS 184
++LS+ QLR S
Sbjct: 126 DEALSSQMGQLRVS 139
>03_06_0170 - 32128619-32129647
Length = 342
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 467 ISTVCGCKYSGSPCLPRCL 523
+ST C C+ SG P LP C+
Sbjct: 88 LSTRCSCQLSGKPSLPGCI 106
>03_06_0163 - 32105234-32105977
Length = 247
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 467 ISTVCGCKYSGSPCLPRCL 523
+ST C C+ SG P LP C+
Sbjct: 83 LSTRCSCQLSGKPSLPGCI 101
>07_03_1424 -
26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = -2
Query: 163 QVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNL 32
+++ V + +MY + ++ R++E++H ++LLQ + T + +L
Sbjct: 797 EISLVKENAEKMYGHDEISVYRQNEILHSSEQLLQDELTHIKSL 840
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = -2
Query: 271 RAASGGAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKD 92
+ A+ A E L KK+ ++ A D EAKD T D N + + +
Sbjct: 108 KLATHRAPLKERLQKKENAVQAKDA--DATNEAKDADATNEAKDANATNEAYATSTAKHK 165
Query: 91 EMMHKKD-ELLQV--KDTQVSNLIA 26
E HK D E LQ+ K+T +S ++
Sbjct: 166 ETSHKTDTEPLQLLKKETTLSKEVS 190
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = -2
Query: 211 ERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSN 35
E I+++ + IE K + ++L ++YTG ++ +K+E + D++ +KD + N
Sbjct: 498 ENSISLQVETIEDKTNFMPEKFSELEKVYTGCEKLNNKKEE-QEENDKINTLKDEKDHN 555
>12_02_0399 - 18600444-18600591,18600626-18601656
Length = 392
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 263 KRWGAKNRGTF*KARVYRTHHRN*GQAD*GQRLASDARDDRPQPHVH 123
K W AK + + V H R+ G Q+L D +D P P +H
Sbjct: 332 KAWRAKQKALEMRPNVCVLHDRHAGLLSAIQKLQEDVTEDVPWPDLH 378
>10_08_0860 - 21136509-21136997
Length = 162
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 392 KSHSCNSMAYGSLLFIIN*ITPDLVISTVCGCKYSGSPCLPRCLEP 529
K+ S N +A +++ +++ + S CG + +G C RC +P
Sbjct: 6 KNSSRNKLAVAAIVALMSLLVFAAAPSEACGGRCNGGACRSRCAKP 51
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 214 IERIIAIKDKQIEAK--DLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELL 62
+E ++ + K+ AK + Q +M +L + F+E KD + K DELL
Sbjct: 163 MELVVLTEAKKAAAKACEAQNDEIMKELEDLKRKFEELQTNKDLVQAKNDELL 215
>12_02_0757 +
22845825-22846032,22848331-22848498,22848929-22849434,
22849890-22850151,22851708-22851942,22854240-22854496,
22854592-22854635
Length = 559
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 254 PTACSAFVCSVNVAISLVTNCLFF 325
PT+C FV S N++++ ++ LFF
Sbjct: 53 PTSCRLFVVSSNISLAFMSCLLFF 76
>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
Length = 717
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = -2
Query: 418 RHRITRMAFRRSHSSRAMHGQVRPRN*TTGGKEQTVGD*TDCDIYRAHKRAASGGAQKTE 239
R ++ M + SS+ QVR R +++T D D D ++ R+ S G + +
Sbjct: 109 REKMKDMVQSDASSSKGEALQVRGRF-----EQKTYNDSNDRDKSQSRGRSKSRGKKFCK 163
Query: 238 ELFKKQEFIERIIAIKDKQIEAKD 167
KK FIE ++DK+ D
Sbjct: 164 YCKKKNHFIEECWKVQDKEKRKSD 187
>04_03_0594 -
17733827-17735085,17735576-17735642,17736379-17736413,
17736810-17737665
Length = 738
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 27 AIKLETCVSLTCNNSSFLCIISSFLCIVS*N-PVYM 131
AI TC N+ S++CI S+ +C+ S N P Y+
Sbjct: 230 AIGNSTCEQAKTNSDSYMCISSNSVCLNSRNGPGYI 265
>02_05_0417 -
28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 277 HKRAASGGAQKT-EELFKKQEFIERIIAIKDKQI 179
H AA GG KT EE+++K+ +E I+ D I
Sbjct: 16 HNAAAGGGGGKTIEEMYQKKTQLEHILLRPDTYI 49
>05_02_0044 + 5968289-5968448,5968551-5968687
Length = 98
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 460 IGRDSIDYEEQASVRHRITRMAFRRSHSSRAMHGQ 356
+GRD +D E +++ R +RSHS +M+GQ
Sbjct: 25 LGRDVLDLPEDSNISKR----HIKRSHSGSSMNGQ 55
>04_04_0085 + 22624918-22625035,22625225-22625421,22625460-22625597
Length = 150
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 265 ASGGAQKTEELFKKQEFIERIIAIKDKQIE 176
A GG + T EL ++Q F+ER+ + ++ E
Sbjct: 109 ALGGGRATLELAQRQAFVERVFHVAEEDNE 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,854,376
Number of Sequences: 37544
Number of extensions: 262332
Number of successful extensions: 700
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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