Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120416X.Seq
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-2|AAA27978.1|  410|Caenorhabditis elegans Hypothetical pr...    33   0.13 
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    33   0.13 
Z50176-1|CAA90538.2|  408|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U53139-7|AAK18935.1|  235|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z54237-1|CAA90987.2|  445|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protei...    28   3.7  
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    28   4.9  
Z46787-9|CAA86747.1|  274|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z81586-5|CAB04696.1|  484|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z29117-11|CAA82382.1|  307|Caenorhabditis elegans Hypothetical p...    27   8.6  
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>L14433-2|AAA27978.1|  410|Caenorhabditis elegans Hypothetical
           protein C50C3.8 protein.
          Length = 410

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
 Frame = -2

Query: 301 TDCDIY--RAHKRAASGGAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRM 128
           TDC I+    H +A      +   +FK       +I  +  +I  +D +   V   +  M
Sbjct: 219 TDCVIHVGNKHIKAHRCILGQNSPVFKSMFSSPNMIEAQKGEIHIEDAKYDSVRAMVEFM 278

Query: 127 YTGFQETMQRK---DEMMHKKD--ELLQVKDTQVSNLIAKMIDLSD 5
           YTG  E+++ +   DE++   D  E+L +KD Q   LIA+ I+L +
Sbjct: 279 YTGATESLESQGNIDEILAIADKYEVLMLKD-QCERLIAQTINLKN 323


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
 Frame = -2

Query: 265 ASGGAQKTEELFKKQEFIERIIAIK-DKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDE 89
           +S  +   E L  K+  IE       DK+      + T   T +N M +  +ET++ + E
Sbjct: 63  SSTDSNAAENLDNKENIIESTFKTAIDKEDTKSCSECTEFKTYMNNMKSVLEETLEEEKE 122

Query: 88  MMHKKDE----LLQVKDTQVSNLIAKMIDLSD 5
              K+DE     L  K+ ++ +L  ++I LS+
Sbjct: 123 KNKKRDEASKKTLNSKNEEIEHLKKRVISLSN 154


>Z50176-1|CAA90538.2|  408|Caenorhabditis elegans Hypothetical
           protein C09G1.1 protein.
          Length = 408

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 68  LVFFVHHFIFSLHSFLK 118
           L FFVHH +F+L S+LK
Sbjct: 20  LFFFVHHLLFNLFSYLK 36


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
           protein T28C6.9 protein.
          Length = 1861

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = -2

Query: 274 KRAASGGAQKTEELFKKQEFIERIIAIKDKQIEAKDLQV---TR----VMTDLNRMYTGF 116
           KR     A   EEL K+ +  E     KD+ ++     V   TR    +  +L+ +  GF
Sbjct: 151 KRTMEELADCNEELEKRVDEYEEAAEEKDEDLKQSTWDVETLTRQNEALRVELDGVRQGF 210

Query: 115 QETMQRKDEMMHKKDEL 65
            ET +  DE+ H + EL
Sbjct: 211 HETRELADEVKHLRSEL 227


>U53139-7|AAK18935.1|  235|Caenorhabditis elegans Hypothetical
           protein F18E3.10 protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +2

Query: 293 AISLVTNCLFFSSCCLIAGSYLPVHST*GMTSSKSHSCNSMAY--GSLLFIIN*ITPDLV 466
           A+  +TN +F   C +    ++P      M   K H C  ++Y        +N  T D V
Sbjct: 115 ALFYLTNIVFLQGCMIFIFWHMPTQKEGRMNVKKDHPCIPLSYVENPNFLHLNSPTSDTV 174

Query: 467 ISTV 478
           + TV
Sbjct: 175 LVTV 178


>Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical
           protein C09H6.2b protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 24/106 (22%), Positives = 48/106 (45%)
 Frame = -2

Query: 424 SVRHRITRMAFRRSHSSRAMHGQVRPRN*TTGGKEQTVGD*TDCDIYRAHKRAASGGAQK 245
           S  HR  R A   + +S  +         T+   + T+GD  +      + + ++GG +K
Sbjct: 155 SPNHREVRPAEDSTETSGVVQNNDELLVPTSTSSDVTIGDVIEKSDSPENSQESAGGEEK 214

Query: 244 TEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQET 107
           +EE  K++   +R  ++  KQ+   + ++TR   + N   +G   T
Sbjct: 215 SEE--KRKLSGDRTDSLIRKQMSEMEKEITRRSQNKNIKTSGLSYT 258


>Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical
           protein F27D4.4a protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = -2

Query: 259 GGAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMH 80
           G ++K+E+  K++   ++   +K+K+       V +V   +    T      Q++     
Sbjct: 7   GPSKKSEQKRKEKVIEDKTFGLKNKKGNKNQKFVAQVENQVRNNNTRMDLVRQQEAAKKK 66

Query: 79  KKDELLQVKD--TQVSNLIAKMID 14
           +KDELL + +    V   +AK +D
Sbjct: 67  EKDELLDIANLLKPVEQKVAKDVD 90


>Z54237-1|CAA90987.2|  445|Caenorhabditis elegans Hypothetical
           protein T11B7.1 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 24/109 (22%), Positives = 42/109 (38%)
 Frame = -3

Query: 525 SKQRGKQGDPLYLQPHTVLITKSGVIQLIMKSKLPYAIELQEWLLEEVIPHVLCTGKYDP 346
           S  +G+   P   Q      T  G+I ++  +     +E Q   +   IPH+    +   
Sbjct: 7   SVSKGESQAPQTRQLEASKPTVQGIIDILHDTISYVQVEKQSKTINFSIPHLQMIKEQLE 66

Query: 345 AIKQQEEKNKQLVTKLIATFTEHTNALQAVGRKKPRNFLKSKSLSNASS 199
           +I+ +++  K L  K      EH   +Q +     R  LK   +  A S
Sbjct: 67  SIQLKDKNYKDLEKKFNEKQDEHLETIQKLDSTLSRQKLKYDDMRQALS 115


>AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protein
           protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 24/106 (22%), Positives = 48/106 (45%)
 Frame = -2

Query: 424 SVRHRITRMAFRRSHSSRAMHGQVRPRN*TTGGKEQTVGD*TDCDIYRAHKRAASGGAQK 245
           S  HR  R A   + +S  +         T+   + T+GD  +      + + ++GG +K
Sbjct: 155 SPNHREVRPAEDSTETSGVVQNNDELLVPTSTSSDVTIGDVIEKSDSPENSQESAGGEEK 214

Query: 244 TEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQET 107
           +EE  K++   +R  ++  KQ+   + ++TR   + N   +G   T
Sbjct: 215 SEE--KRKLSGDRTDSLIRKQMSEMEKEITRRSQNKNIKTSGLSYT 258


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 115 QETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDR 2
           ++ ++R   ++ +KD+L+  KD Q+SNL A   +L  +
Sbjct: 225 EDEIRRLKTLLAEKDQLIFDKDKQISNLKADQYNLDKK 262


>Z46787-9|CAA86747.1|  274|Caenorhabditis elegans Hypothetical
           protein C16C10.9 protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -2

Query: 205 IIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQ 44
           ++AI+ + +E +   + R+  D+ RM   + E +    +MM  K+E++Q  D Q
Sbjct: 49  MVAIR-QSVEQRQEYIRRMSIDIQRMLIPYGEDVYLISDMMLLKEEVVQHIDFQ 101


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/61 (22%), Positives = 32/61 (52%)
 Frame = -2

Query: 211 ERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNL 32
           E  +A++ K+++  D    RV  +L++      +TM++  E+  + +  L+V  +   NL
Sbjct: 328 ESCLAVRRKKVQVGDHTSDRVDMELHKEKELMTDTMKQMKEIGERVERQLEVNQSARKNL 387

Query: 31  I 29
           +
Sbjct: 388 L 388


>Z81586-5|CAB04696.1|  484|Caenorhabditis elegans Hypothetical
           protein T05F1.7 protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -2

Query: 271 RAASGGAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKD 92
           R  +    K E+  KK + +++   ++DK+I      + R     +++     + +QR+ 
Sbjct: 122 RTENSMKSKMEKAKKKLDEMKKKKIVQDKKISRLRSDIARSEKSFDKVEKDIHKEIQRQM 181

Query: 91  EMMHKKDEL-LQVKDTQVSN 35
           E   KK+E+  ++K  +V N
Sbjct: 182 ENETKKEEIERRIKIFEVEN 201


>Z29117-11|CAA82382.1|  307|Caenorhabditis elegans Hypothetical
           protein C48B4.11 protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 290 VAISLVTNCLFFSSCCLIAGSYLPV 364
           V  ++V + +FF  CCL+A  Y PV
Sbjct: 214 VGQAIVFSVIFFLLCCLLAYEYSPV 238


>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/64 (20%), Positives = 31/64 (48%)
 Frame = -2

Query: 229 KKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKD 50
           K +E+IE+          + D  +TR+  +  +M    ++  Q KD+ + +  E ++V  
Sbjct: 514 KAEEYIEKENHRVQNASSSHDADITRLENEKTQMEEALEKADQEKDQAIREASESVRVMK 573

Query: 49  TQVS 38
            +++
Sbjct: 574 REMT 577


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/64 (20%), Positives = 31/64 (48%)
 Frame = -2

Query: 229 KKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKD 50
           K +E+IE+          + D  +TR+  +  +M    ++  Q KD+ + +  E ++V  
Sbjct: 514 KAEEYIEKENHRVQNASSSHDADITRLENEKTQMEEALEKADQEKDQAIREASESVRVMK 573

Query: 49  TQVS 38
            +++
Sbjct: 574 REMT 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,921,521
Number of Sequences: 27780
Number of extensions: 237349
Number of successful extensions: 828
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)