Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120416X.Seq
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.49 
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   4.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.0  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 70  ELLQVKDTQVSNLIAKMIDLSD 5
           +L  +K    SNL+AK IDLSD
Sbjct: 187 DLKHMKQEAGSNLVAKGIDLSD 208


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 172 KDLQVTRVMTDLNRMYTGFQETMQRK 95
           KDL    V++    MY G  + MQ++
Sbjct: 66  KDLYANTVLSGGTTMYPGIADRMQKE 91


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 414 IELQEWLLEEVIPHVLCTG 358
           +E   W L + + H+LC G
Sbjct: 323 LEQYSWALFKAMSHMLCIG 341


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 414 IELQEWLLEEVIPHVLCTG 358
           +E   W L + + H+LC G
Sbjct: 291 LEQYSWALFKAMSHMLCIG 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,418
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)