Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120415.Seq
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 30 0.33
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 29 0.77
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 28 1.8
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.8
SPBC1709.20 |pop8||RNase P and RNase MRP subunit Pop8 |Schizosac... 27 4.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.1
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 27 4.1
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 26 5.4
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 5.4
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 26 5.4
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 25 9.5
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 9.5
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 9.5
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 30.3 bits (65), Expect = 0.33
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 14 ERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSV 187
+RGN + +PPPPL Y P AT NA NNA TT N + ++ ++ +
Sbjct: 55 QRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYANDYSSEL 111
Query: 188 AIAPYNKSKEPTLD 229
A +N + P +D
Sbjct: 112 AYI-HNVNDMPHVD 124
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 29.1 bits (62), Expect = 0.77
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +2
Query: 68 NPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE-PTLDAGESI 244
+P T + + P V DN M T NK LDA ES
Sbjct: 418 DPETNLIAGLAPLKDTPVMVMGVESDNLMPVECQRETARCLEKAGNKQVVYHELDANESF 477
Query: 245 WYNNVWILFKKLLDITGAMTCQNLVLS 325
+ ++ +++++K LD+ G + L LS
Sbjct: 478 YGHDTFLIYRKDLDLVGGKLKKFLELS 504
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 27.9 bits (59), Expect = 1.8
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +1
Query: 148 QNGHEPQQQHKLGSDRTV-QQEQRTDARRRRIYLVQQCVDFVQKIIR-YYRCNDMSELSP 321
+N +++ G TV ++E ++ RR I V++ V +++ RCN ++ S
Sbjct: 1141 KNNRRLERKRARGKKGTVFEEEYLVNSLRRLIARVEEIRPEVHRLLEALVRCNMTTQASE 1200
Query: 322 LMIHFINTIRDMCIDTNPINVNVVKRFES 408
L +F N I + PI V FE+
Sbjct: 1201 LQRNFANVIGTIGEKVIPILSVPVSTFET 1229
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 417 HDTPPDSVAKRVGTRQRGRVPAERFEYI-SGMFVLNSLPA 533
+D+ PD++ +RV +QR P + F+ I + V+NS A
Sbjct: 160 NDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKA 199
>SPBC1709.20 |pop8||RNase P and RNase MRP subunit Pop8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 403 ESEETMIRHLIRLQKELGQGNAAESLPSDSNIFQACLC*IRCRRTRKNFTTVALICWVK 579
E ++ +RHLI L G ++P D Q+ +RC + K VAL +V+
Sbjct: 27 EIDDISLRHLITLALNQSFGIFGSAIPIDFLHRQSKFLYLRCHKEDKKKVLVALGSYVR 85
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 626 HGGGIGDVQHSHSVTVQSAAGQQLHD--SVAQARHSAAKH 739
H I D + +VT+ S++GQ H S H+ H
Sbjct: 3688 HSSSISDTKSPATVTISSSSGQFTHSTFSTGSTMHNTVSH 3727
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 244 LVQQCVDFVQKIIRYYRCNDMSELSPLMIHFINT 345
+V +C+ F+ + R ++C D +E L+ F+NT
Sbjct: 508 VVNRCI-FLARNFRIFKCMDWAEKVRLLWEFVNT 540
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 546 FYNGGADMLGKDALAEAAKQLSLA 617
FY ++ GK LAEAAKQ+ ++
Sbjct: 49 FYIPSFNLFGKGCLAEAAKQIKMS 72
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 47 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 190
PP+ P+ + TN+ ++A G+ PP K++ RS+S N A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 796 DQIVDHVDVRKGRDSTALCMFGGRVACLSNRVM*LLAS 683
D ++DH +VR+G S+ + FG R + L+ + AS
Sbjct: 137 DDVIDHANVRRGSPSSNVA-FGNRRSILAGNFILARAS 173
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 143 DNKMDTSRSNSTNSVAIAPYNKSKEPTLDAGESIWYNNVW 262
+NK+D N++ I+P +K+ E +D G Y+ W
Sbjct: 67 ENKLDYIEDMGFNAIWISPIDKNIEGDID-GAGYAYHGYW 105
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 133 YDARQQNGHEPQQQHKLGSDRTVQQEQR 216
Y QQN E Q HK D+ QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 17 RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 112
RG Y N PP Y SN ++YNN
Sbjct: 953 RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,914
Number of Sequences: 5004
Number of extensions: 67412
Number of successful extensions: 288
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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