Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120414.Seq
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 30 0.27
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 29 0.63
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 28 1.5
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 27 1.9
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.5
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 3.4
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 27 3.4
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 26 4.4
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 4.4
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 25 7.8
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 7.8
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 7.8
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 30.3 bits (65), Expect = 0.27
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 14 ERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSV 187
+RGN + +PPPPL Y P AT NA NNA TT N + ++ ++ +
Sbjct: 55 QRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYANDYSSEL 111
Query: 188 AIAPYNKSKEPTLD 229
A +N + P +D
Sbjct: 112 AYI-HNVNDMPHVD 124
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 29.1 bits (62), Expect = 0.63
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +2
Query: 68 NPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE-PTLDAGESI 244
+P T + + P V DN M T NK LDA ES
Sbjct: 418 DPETNLIAGLAPLKDTPVMVMGVESDNLMPVECQRETARCLEKAGNKQVVYHELDANESF 477
Query: 245 WYNNVWILFKKLLDITGAMTCQNLVLS 325
+ ++ +++++K LD+ G + L LS
Sbjct: 478 YGHDTFLIYRKDLDLVGGKLKKFLELS 504
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +1
Query: 148 QNGHEPQQQHKLGSDRTV-QQEQRTDARRRRIYLVQQCVDFVQKIIR-YYRCNDMSELSP 321
+N +++ G TV ++E ++ RR I V++ V +++ RCN ++ S
Sbjct: 1141 KNNRRLERKRARGKKGTVFEEEYLVNSLRRLIARVEEIRPEVHRLLEALVRCNMTTQASE 1200
Query: 322 LMIHFINTIRDMCIDTNPINVNVVKRFES 408
L +F N I + PI V FE+
Sbjct: 1201 LQRNFANVIGTIGEKVIPILSVPVSTFET 1229
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 456 TRQRGRVPAERFDYISGMFVLNSLPAYAPKFYNGGADMFGKDALARRPY-NSAWP 617
+ RG A F Y+ F LN +P + +DMF AL P+ AWP
Sbjct: 261 SENRGISSASLFPYVVNTFSLNVFRPISPALNDYSSDMF---ALDDEPFLEPAWP 312
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 417 HDTPPDSVAKRVGTRQRGRVPAERFDYI-SGMFVLNSLPA 533
+D+ PD++ +RV +QR P + F I + V+NS A
Sbjct: 160 NDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKA 199
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 579 DALARRPYNSAWPSSTW-WR 635
DA+A R Y +W STW WR
Sbjct: 174 DAIAHRGYYWSWSPSTWPWR 193
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 244 LVQQCVDFVQKIIRYYRCNDMSELSPLMIHFINT 345
+V +C+ F+ + R ++C D +E L+ F+NT
Sbjct: 508 VVNRCI-FLARNFRIFKCMDWAEKVRLLWEFVNT 540
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 607 ELYGRLAKASLPNISAPPL*NFGAYAGSEFSTNMP 503
ELYG L +SLP + A P G + G + S P
Sbjct: 245 ELYGHLPSSSLPPLEAIPSHYTGGFMGIKKSEAPP 279
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 47 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 190
PP+ P+ + TN+ ++A G+ PP K++ RS+S N A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 143 DNKMDTSRSNSTNSVAIAPYNKSKEPTLDAGESIWYNNVW 262
+NK+D N++ I+P +K+ E +D G Y+ W
Sbjct: 67 ENKLDYIEDMGFNAIWISPIDKNIEGDID-GAGYAYHGYW 105
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 133 YDARQQNGHEPQQQHKLGSDRTVQQEQR 216
Y QQN E Q HK D+ QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 17 RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 112
RG Y N PP Y SN ++YNN
Sbjct: 953 RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,011
Number of Sequences: 5004
Number of extensions: 58070
Number of successful extensions: 235
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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