Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120413.Seq
         (770 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.67 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.67 
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    25   0.88 
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   2.0  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.7  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 120 CVQFLGGIVVVYLF*SGVEKVLQLPIIETLL 212
           CV FLG I++ ++F   +  ++ + I +TL+
Sbjct: 235 CVFFLGSILIFFIFPLAILIIVYILIAKTLM 265


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 349 AVLTLYDSRCQTCPATTSRCTCW 417
           ++++L + +C TC     + TCW
Sbjct: 864 SIVSLGEYKCVTCKCENGKPTCW 886


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -1

Query: 566 SLWKKLAGFLTARSSTSFHYVTMERRRCHLQV 471
           S+ + +   +TA    +  Y+ M+R+ CH+++
Sbjct: 154 SITRSIRLTITASCPMNLQYLPMDRQLCHIEI 185


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  SVFIVCLSVLMASLNSACISL-RVKQSELHP 113
           SVF+V L VL+ +  S CI + +  +S L P
Sbjct: 210 SVFMVPLVVLIFTYTSICIEIWQSSESSLRP 240


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 697 HSKTALSGSIIINNPAAFRILH 762
           +SK  +SGSI +   + +RIL+
Sbjct: 233 YSKIIISGSIFMTTTSFYRILN 254


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,474
Number of Sequences: 336
Number of extensions: 3745
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)