Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120413.Seq
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0625 - 26225201-26225879,26226706-26227553 29 3.1
02_02_0617 - 12184745-12185008,12185352-12185451,12186585-121866... 29 3.1
02_01_0557 + 4103721-4104616,4105428-4105626 29 4.1
03_06_0586 + 34917836-34918038,34918155-34918488,34918560-349187... 29 5.4
01_06_1170 + 35087705-35088211 29 5.4
12_02_0161 + 14659338-14659467,14659553-14659888,14660034-146602... 28 7.2
08_02_1391 + 26668539-26668668,26668757-26669490,26669569-266700... 28 7.2
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409... 28 7.2
07_03_0052 - 12833004-12833057,12833917-12833955,12834231-128346... 28 7.2
05_05_0256 - 23647736-23648947 28 7.2
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506... 28 7.2
04_03_0923 + 20843477-20845044,20846081-20846996 28 9.5
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 65 EQRLYFASGQAVRITPA*VRAIFGGHRC 148
E+R + G+A R T A +R F GH+C
Sbjct: 236 EERTFHRQGEAARTTIADMRMDFSGHKC 263
>02_02_0617 -
12184745-12185008,12185352-12185451,12186585-12186653,
12187988-12188037
Length = 160
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 133 KNCTHLGGCNSDCLTRSEIQALFREAINTLKHTMNTEDVCAHML 2
++C HL G + + L E+Q L ++ NT KH + +D HML
Sbjct: 38 RHC-HLMGEDLESLNLKELQQLEKQLKNTSKHIRSRKDEEKHML 80
>02_01_0557 + 4103721-4104616,4105428-4105626
Length = 364
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 84 LRVKQSELHPPKCVQFLGGIVVVYLF*SGVEKVLQLPIIETLLDAAHKTKKFNVIAV 254
LR++ PK ++FLG +V+ YL + + L + + L+ +AHK K I +
Sbjct: 82 LRMENGGHVEPKTIKFLGFVVMGYLLITNLGGSLLIYLYLNLVPSAHKILKRKGIGI 138
>03_06_0586 +
34917836-34918038,34918155-34918488,34918560-34918712,
34918808-34919107,34919498-34919576,34919687-34919793,
34919861-34919979,34920532-34920850
Length = 537
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -2
Query: 331 ITRSLAIVPLNKYFNYMNDKQLITYDTAITLNFLVLCAASRSVSIIGNCKTFSTPL 164
I L+I L K+F+++ND + T DT + LVL AS + + K + L
Sbjct: 134 IGEPLSIDALKKHFDFINDLAVQTLDTWLDRRVLVLEEASSVIIKLFTLKVIANML 189
>01_06_1170 + 35087705-35088211
Length = 168
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 623 MEIFSRKVSFMSAAGAFGSGTRDGHTARQPCP 718
+E R + ++ GA+G G R G PCP
Sbjct: 118 LEALKRLLCWLGIGGAWGGGRRRGEEPAAPCP 149
>12_02_0161 +
14659338-14659467,14659553-14659888,14660034-14660266,
14660344-14660805,14660887-14661719,14661802-14661972,
14662052-14662352
Length = 821
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = -2
Query: 556 RNWPVF*QRVHLQVSITLQWKDDGVTYKYLIYVGVVRGNLIDVNAKPNTYTVKLLPGTFG 377
RNW +V+ S+T + K D V Y+ L+ + + + +V++ P + +L G
Sbjct: 204 RNWARARGKVNPDSSVTFENKSDAVVYQELLGLVAEQASQSEVDSAPKRHEDDILTKALG 263
Query: 376 ND 371
+
Sbjct: 264 TN 265
>08_02_1391 +
26668539-26668668,26668757-26669490,26669569-26670030,
26670112-26670944,26671364-26671577
Length = 790
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -2
Query: 556 RNWPVF*QRVHLQVSITLQWKDDGVTYKYLIYVGVVRGNLIDVNAKPNTYTVKLLPGTFG 377
RNW +V+L S+T + K D V Y+ L+ + + + +V + P +L G
Sbjct: 259 RNWARARGKVNLDGSVTFENKSDAVIYQELLCLVAEQASQSEVESAPKRREDDILTKALG 318
>07_03_1003 +
23239829-23240121,23240257-23240349,23240785-23240993,
23241585-23241729,23241809-23241881,23242165-23242311,
23242411-23242536,23242653-23242712
Length = 381
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 382 TCPATTSRCTCWVWRSRQSSCRARRLR 462
+CPA+++R T W R+R SS A R R
Sbjct: 32 SCPASSARRTTWRPRARLSSGNAARAR 58
>07_03_0052 -
12833004-12833057,12833917-12833955,12834231-12834651,
12834731-12834901,12834984-12835816,12835898-12836359,
12836438-12837171,12837260-12837389
Length = 947
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -2
Query: 556 RNWPVF*QRVHLQVSITLQWKDDGVTYKYLIYVGVVRGNLIDVNAKPNTYTVKLLPGTFG 377
RNW +V+L S+T + K D V Y+ L+ + + + +V + P +L G
Sbjct: 259 RNWAWARGKVNLDGSVTFENKSDAVVYQKLLGLVAEQASQSEVESAPKRREDDILTKALG 318
>05_05_0256 - 23647736-23648947
Length = 403
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 388 PATTSRCTCWVWRSRQSSCRARRLRISNTCK*HRRL 495
PA T+ CW R R +SCR++ R + HRRL
Sbjct: 362 PAETAASGCWGRRRRTTSCRSKPRRAT-----HRRL 392
>04_04_0964 -
29749624-29749649,29749742-29749945,29750036-29750634,
29750742-29750826,29750914-29751562,29751568-29751643,
29753891-29753957,29754097-29754998,29756579-29756790
Length = 939
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -1
Query: 248 NYIEFFSFVRSIKKRFDNRQLQDFFYATLKKIDNNDAPQK---LHALRRV*FG-LLDPKR 81
+Y++ I FDN L D + L + D N++P++ +H + R+ G L+
Sbjct: 291 SYVQELELCAEISGLFDNPLLGDEYPYELNQYDYNNSPEQCTCMHCVARMESGALICALP 350
Query: 80 NTSAVQGSHQHAQAHNEY 27
+T ++ H A+ EY
Sbjct: 351 STFSIHFFHLDAEIDMEY 368
>04_03_0923 + 20843477-20845044,20846081-20846996
Length = 827
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 460 VGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRIMLK 353
VG++ ID+ ++ KL G+FG+ +R ML+
Sbjct: 488 VGIIAFRYIDLQRATKNFSKKLGGGSFGSVFRAMLR 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,421,669
Number of Sequences: 37544
Number of extensions: 411561
Number of successful extensions: 1202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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