Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120413.Seq
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)          30   1.8  
SB_46983| Best HMM Match : I-set (HMM E-Value=5.8)                     30   2.4  
SB_19794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_35717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_29585| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07)                 29   5.5  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       28   9.6  
SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)
          Length = 580

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 3   NMCAQTSSVFIVCL----SVLMASLNSACISLRVKQSELHPPKCVQFLGGIVVVYLF 161
           N+  Q  + F+ CL    + L A +++ C+ ++     + PP    +L G+ +++LF
Sbjct: 278 NLKTQFKAFFLFCLYFDLTPLPADIDTVCLYVQFLSRSIAPPSIRNYLNGVKLLHLF 334


>SB_46983| Best HMM Match : I-set (HMM E-Value=5.8)
          Length = 186

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 502 QWKDDGVTYKYLIYVGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRIMLK 353
           +W+D+ V   Y        GN+I     P   T KLLPG     Y + ++
Sbjct: 22  KWEDEDVPLTYRFQYMSEFGNIILQTGFPGNATAKLLPGNASLSYMVNIE 71


>SB_19794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -2

Query: 424 AKPNTYTVKLLPGTFGNDYRIMLKPRRFNCEITRSLAIVPLNKYFNYMNDKQLITYDT 251
           AK  T   +  PGT   D+R+ L PR   C       I P N+ F++ ++  L   DT
Sbjct: 81  AKTITTASRGAPGTTYYDFRVHLPPRNGTC--GTDTPIQPANQVFSFCSEGWLDMDDT 136


>SB_35717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = -2

Query: 442 NLIDVNAKPNTYTVKLLPGTFGNDYRIMLKPRRFNCEITRSLAIVPLN---KYFNYMNDK 272
           N+I+   +  ++ ++L+P +F +      +   F+ +   ++ IV LN   +YF    +K
Sbjct: 22  NIINTLTRRQSFFIRLIPRSFNHPQTKRCRTACFSGKSATTVRIVTLNGLLRYFVARENK 81

Query: 271 QLITYDTAITLNFLVLCAASRSVSIIG 191
                  +  LN   L  A R+V++ G
Sbjct: 82  YHSVQPLSCQLNQCKLLIAVRTVTLYG 108


>SB_29585| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-07)
          Length = 408

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -1

Query: 632 KFPYHEVIAIVATQKFTKLPCASLWKKLAGFLTARSSTSFHYVTMERRRCHLQV 471
           K+ +  + AI      T LP    W K   F+   +S +F  +T +RRR HL++
Sbjct: 109 KYLFGSLCAIWTYGILTMLPPLVGWSK---FVPGAASKAFISITSQRRRAHLRI 159


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +1

Query: 382 TCPATTSRCTC---WVWRSRQSSCRARRLRIS 468
           TC A T RC+C   W   S  +SC A R  I+
Sbjct: 679 TCNAITGRCSCGTGWTGPSCNASCSAGRYGIN 710


>SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +2

Query: 548 PVSSTNSRTAVS*TFASQQSR*P---RGMEIFSRKVSFMSAAGAF 673
           PVSSTN R   S TF ++ ++     R +E +S ++S + A G F
Sbjct: 379 PVSSTNQRHRTSVTFFAEGTKMRLRCRRLEAYSPEISVLGAFGFF 423


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,066,832
Number of Sequences: 59808
Number of extensions: 504509
Number of successful extensions: 1196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)