Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120413.Seq
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical...    32   0.52 
AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical...    32   0.52 
Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF125963-4|AAD14745.2|  408|Caenorhabditis elegans F-box a prote...    28   6.4  

>AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 343 SVAVLTLYDSRCQTCPATTSRCTCWVWRSRQSSCRARRLRISN 471
           +++V+  +D  C  C   +S C  W   ++   CR    RISN
Sbjct: 10  TISVVAAFDDECIKCDLRSSYCKTWENSTQSCECRDGFARISN 52


>AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 343 SVAVLTLYDSRCQTCPATTSRCTCWVWRSRQSSCRARRLRISN 471
           +++V+  +D  C  C   +S C  W   ++   CR    RISN
Sbjct: 10  TISVVAAFDDECIKCDLRSSYCKTWENSTQSCECRDGFARISN 52


>Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical
           protein VZK822L.2 protein.
          Length = 83

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 48  VLMASLNSACISLRVKQSELHPPKCVQFLGGIVVVYL 158
           +L+  ++  CI + + QS L PP+C     G +++ L
Sbjct: 13  LLVGGMSIVCILIHIIQSTLRPPQCCHNSSGTLIIGL 49


>AF125963-4|AAD14745.2|  408|Caenorhabditis elegans F-box a protein
           protein 214 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
 Frame = -1

Query: 320 PGHRAAQQIF*LYERQTIDHVRYSNYIEFFSFVRSIKK--RFDN--RQLQDFFYATLKKI 153
           P + A Q+   ++E +T+D+  Y +Y+ +     +++   +FD   RQL D     +KKI
Sbjct: 19  PVYEAYQKFCKVFECETMDYREY-DYLYYHLNNDNVQSGIKFDQKTRQLSDVPIDLVKKI 77

Query: 152 DNNDAPQKLHALRRV*FGLLDPKRNTSAVQGS 57
             N   +K+  LR    G+ D   N     GS
Sbjct: 78  IGNLDYEKMTILRNTSTGIRDLVDNFDLKTGS 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,695,339
Number of Sequences: 27780
Number of extensions: 373015
Number of successful extensions: 990
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)