Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120413.Seq
(770 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 24 1.8
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 1.8
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 24 1.8
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 24 1.8
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.1
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 3.1
S76957-1|AAB33932.1| 169|Apis mellifera olfactory receptor prot... 22 7.3
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 7.3
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 22 7.3
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 1.8
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = -1
Query: 566 SLWKKLAGFLTARSSTSFHYVTMERRRCHLQV 471
S+ + + +TA + Y M+R+ CH+++
Sbjct: 125 SITRSIRLTITASCPMNLQYFPMDRQLCHIEI 156
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 1.8
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = -1
Query: 566 SLWKKLAGFLTARSSTSFHYVTMERRRCHLQV 471
S+ + + +TA + Y M+R+ CH+++
Sbjct: 125 SITRSIRLTITASCPMNLQYFPMDRQLCHIEI 156
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.8 bits (49), Expect = 1.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 466 IYVGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRIMLKP 350
+ +G+ LIDVN K T + NDY++ P
Sbjct: 48 VKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWNP 86
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.8 bits (49), Expect = 1.8
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = -1
Query: 566 SLWKKLAGFLTARSSTSFHYVTMERRRCHLQV 471
S+ + + +TA + Y M+R+ CH+++
Sbjct: 64 SITRSIRLTITASCPMNLQYFPMDRQLCHIEI 95
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 3.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 439 LIDVNAKPNTYTVKLLPGTFGNDYRIMLKPRRF 341
LIDVN K T L DY++ +P+ +
Sbjct: 65 LIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEY 97
Score = 21.4 bits (43), Expect = 9.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 180 VLQLPIIETLLDAAHKTKKFNVIAVSYVINC 272
+LQ P + D KKFN + V+NC
Sbjct: 538 ILQAPTLYD--DRVPIDKKFNEFGTTAVVNC 566
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 3.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 439 LIDVNAKPNTYTVKLLPGTFGNDYRIMLKPRRF 341
LIDVN K T L DY++ +P+ +
Sbjct: 65 LIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEY 97
Score = 21.4 bits (43), Expect = 9.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 180 VLQLPIIETLLDAAHKTKKFNVIAVSYVINC 272
+LQ P + D KKFN + V+NC
Sbjct: 538 ILQAPTLYD--DRVPIDKKFNEFGTTAVVNC 566
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.0 bits (47), Expect = 3.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -2
Query: 484 VTYKYLIYVGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRIMLKPRRF 341
VT + + + LIDVN K T L DY++ P+ +
Sbjct: 46 VTDALTVKIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWDPKEY 93
>S76957-1|AAB33932.1| 169|Apis mellifera olfactory receptor
protein.
Length = 169
Score = 21.8 bits (44), Expect = 7.3
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = -2
Query: 343 FNCEITRSLAIV----PLNKYFNYMNDKQLITYDT-AITLNFLVLCAASRSVSIIGNCKT 179
F C+++ SL+++ LNK ++ + + + I ++++ + A +S G C+
Sbjct: 57 FFCDMSPSLSLLCADTRLNKLAVFIVAGAVGVFSSPTILISYIYILMAILRMSADGGCRN 116
Query: 178 FST 170
FST
Sbjct: 117 FST 119
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 7.3
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -2
Query: 421 KPNTYTVKLLPGTFGNDYRIMLKPRRFNCEITRSLAIVPLNKYFNYMNDKQLITY----D 254
K Y + + ++ML N ++R++ +V N NY N+ QL T+
Sbjct: 3 KNRNYALDVSSAASKTSSKVMLTRGTVNDIVSRNITMVLENLLMNYENN-QLPTHGKGTP 61
Query: 253 TAITLNFLV 227
T + N L+
Sbjct: 62 TVVKTNILI 70
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.8 bits (44), Expect = 7.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Frame = -1
Query: 95 LDPKRNTSAVQGSHQHAQAHNEY 27
+ P++ Q QH QAH ++
Sbjct: 179 MQPQQGQHQSQAQQQHLQAHEQH 201
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,351
Number of Sequences: 438
Number of extensions: 4504
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -