Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120412.Seq
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.2  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   2.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   8.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 253 LTLYDSRCQTCPATTSRCTCW 315
           ++L + +C TC     + TCW
Sbjct: 866 VSLGEYKCVTCKCENGKPTCW 886


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 18  CVQFLGGIGVVYLF*SGVEKVLQLPIIETLL 110
           CV FLG I + ++F   +  ++ + I +TL+
Sbjct: 235 CVFFLGSILIFFIFPLAILIIVYILIAKTLM 265


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 430 RCQKTGQFLPQTRARQFRKLLRRNNR 507
           RC++  QF+P    +Q   + RRN R
Sbjct: 68  RCKRKIQFMPYGPQQQPASVARRNAR 93


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 427 FIYKFPFTLQWKDDGVTYKYLIYVGVVRGNLIDV 326
           FI  FP T+  + +G+ Y +      +R  LID+
Sbjct: 32  FICLFPITINIRKNGLNYNFTKKCYFLRMVLIDL 65


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = -2

Query: 407 YVTMERRRCHLQV 369
           Y+ M+R+ CH+++
Sbjct: 173 YLPMDRQLCHIEI 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,410
Number of Sequences: 336
Number of extensions: 3058
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)