Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120412.Seq
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   3.1  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    26   4.1  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     26   5.4  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    25   9.5  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   9.5  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   9.5  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 485 LRNCRARVCGRNWPVF*QRVHLQVSIYVTM 396
           LR C    C R+ P+F + +H  VS +VT+
Sbjct: 112 LRQCLLHPCIRSNPIFDKFIHSTVSWHVTL 141


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 158 YDYSN-YIEFFSFVRSIKKRFDNRQLQDFFYATL 60
           YD S+ Y+EF   + S++K+ D+ +    FY  L
Sbjct: 83  YDQSSSYVEFRKHLESVEKKADSSKALRIFYIAL 116


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 158 YDYSNYIEFFSFVRSIKK 105
           Y YS Y+E F F R+ KK
Sbjct: 81  YQYSTYLENFVFARNAKK 98


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 80  DFFYATLKKIDNTDAPQKLHALR 12
           D F+ +L+++D  D P+K  ALR
Sbjct: 68  DGFHYSLEELDRFDNPEKARALR 90


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 442 FFDSAFIYKFPFTLQWKDDGVTYKYLIYVGV 350
           F D   IY +P T +W    +   Y IYV V
Sbjct: 118 FIDMLAIYAYPDTGEWMVWVIRILYYIYVAV 148


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 576 SANAPAADINDTFLEKISIPRGHAIVATQKF 484
           SAN  A  +N    + +S P  H IVAT  F
Sbjct: 52  SANIFAKIVNVKAFKPVSSPTDHIIVATDSF 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,521
Number of Sequences: 5004
Number of extensions: 51700
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)