Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120412.Seq
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409... 31 0.80
01_01_1122 + 8899946-8900043,8900191-8900291,8900416-8900945 29 3.2
03_02_0914 - 12351553-12351679,12351966-12352102,12352558-123526... 29 4.2
02_01_0557 + 4103721-4104616,4105428-4105626 29 4.2
01_06_1014 - 33810112-33811995 29 4.2
05_05_0256 - 23647736-23648947 28 5.6
04_04_0237 + 23831949-23832354,23833970-23835166,23835274-238354... 28 7.4
06_03_0593 + 22596372-22596384,22596856-22597037,22597119-225973... 27 9.8
04_04_1210 + 31761689-31762255,31762318-31762322,31763009-317631... 27 9.8
03_06_0713 - 35687672-35689219 27 9.8
03_05_1070 + 30125131-30127029 27 9.8
>07_03_1003 +
23239829-23240121,23240257-23240349,23240785-23240993,
23241585-23241729,23241809-23241881,23242165-23242311,
23242411-23242536,23242653-23242712
Length = 381
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 202 SGTMARLRVISQLK-RRGLT-LYDSRCQTCPATTSRCTCWVWRSRQSSCRARRLR 360
SG AR V + L RRG + +CPA+++R T W R+R SS A R R
Sbjct: 4 SGAAARPPVATTLSARRGTAPSATAAAASCPASSARRTTWRPRARLSSGNAARAR 58
>01_01_1122 + 8899946-8900043,8900191-8900291,8900416-8900945
Length = 242
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 178 FI*LKYLLSGTMARLRVISQLKRRGLTLYDSRCQTCPATTSRCTCWVWRSRQSSCRARRL 357
F+ L YL+ M +L LK T + C C + C++WR+ +S+ R RR
Sbjct: 60 FLVLSYLMLLVMWKLGGKCVLKSACKTAM-AACSCCCHAMAAAPCYLWRALRSTRRVRRG 118
Query: 358 R 360
R
Sbjct: 119 R 119
>03_02_0914 -
12351553-12351679,12351966-12352102,12352558-12352653,
12353056-12353989,12354985-12355175
Length = 494
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 30 LGGIGVVYLF*S-GVEKVLQLPIIETLLDAAHKTKKFNVIAVIVRDQLFVVHI 185
+G +GVVY S G+E V L I D + KT+ F V+ V + D F++ I
Sbjct: 314 VGALGVVYFIASEGLELVENLGNIN---DFSGKTRLFLVLPVAILDATFIIWI 363
>02_01_0557 + 4103721-4104616,4105428-4105626
Length = 364
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 12 PKCVQFLGGIGVVYLF*SGVEKVLQLPIIETLLDAAHKTKKFNVIAVIV 158
PK ++FLG + + YL + + L + + L+ +AHK K I +IV
Sbjct: 92 PKTIKFLGFVVMGYLLITNLGGSLLIYLYLNLVPSAHKILKRKGIGIIV 140
>01_06_1014 - 33810112-33811995
Length = 627
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 242 FNCEITRSLAIVPLNKYFNYMNDKQLITYDYSNYIEFFSFVRSI 111
+NC + + + LNK Y+ K +T D N +E +RS+
Sbjct: 446 YNCRVAELVRLEKLNKLSVYIGSKVAVTGDELNELENIKGLRSL 489
>05_05_0256 - 23647736-23648947
Length = 403
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 286 PATTSRCTCWVWRSRQSSCRARRLRISNTCK*HRRL 393
PA T+ CW R R +SCR++ R + HRRL
Sbjct: 362 PAETAASGCWGRRRRTTSCRSKPRRAT-----HRRL 392
>04_04_0237 +
23831949-23832354,23833970-23835166,23835274-23835453,
23835537-23835823,23835912-23836029,23836354-23836483,
23836693-23836861,23836926-23836991,23837466-23837738,
23838131-23838349
Length = 1014
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 528 ISIPRGHAIVATQKFTKLPCASLWKKLAGFLTARSSTSFHLR 403
+++ GHA + K T A +W L G L + HLR
Sbjct: 622 LAVSLGHAEINFLKHTSAELADIWVPLEGKLAQTCQSRLHLR 663
>06_03_0593 +
22596372-22596384,22596856-22597037,22597119-22597344,
22597429-22597855,22598075-22598429,22598511-22599089
Length = 593
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 302 GVRVGFG---VHVNQVAAHDAYVYQILVSDTVVFPL*RKWK 415
GVR G VH+NQVA + Y I +S T V+ RKW+
Sbjct: 325 GVRTDKGFKEVHLNQVARSLSDHYGIEISRTQVYNHLRKWR 365
>04_04_1210 +
31761689-31762255,31762318-31762322,31763009-31763146,
31774759-31775368
Length = 439
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 343 GNLIDVNAKPNTYTVKLLPGTFGNDYRIMLNR 248
G L +NAKP+T LPGT R+ L R
Sbjct: 360 GPLPWLNAKPSTGPAGALPGTLDKTVRVALTR 391
>03_06_0713 - 35687672-35689219
Length = 515
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 286 PATTSRCTCWVWRSRQSSCRARR 354
PAT S TC + R R+S+ ARR
Sbjct: 4 PATVSHTTCAIQRRRRSTAPARR 26
>03_05_1070 + 30125131-30127029
Length = 632
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 556 GGGRVRAPVRATGTQQDSLVRLD 624
GGGR A R+T TQ ++RLD
Sbjct: 522 GGGRGEAAWRSTATQDSQVLRLD 544
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,299,025
Number of Sequences: 37544
Number of extensions: 333322
Number of successful extensions: 916
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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