Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120412.Seq
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46983| Best HMM Match : I-set (HMM E-Value=5.8)                     29   2.5  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       28   7.6  

>SB_46983| Best HMM Match : I-set (HMM E-Value=5.8)
          Length = 186

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 400 QWKDDGVTYKYLIYVGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRI 260
           +W+D+ V   Y        GN+I     P   T KLLPG     Y +
Sbjct: 22  KWEDEDVPLTYRFQYMSEFGNIILQTGFPGNATAKLLPGNASLSYMV 68


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +1

Query: 280 TCPATTSRCTC---WVWRSRQSSCRARRLRIS 366
           TC A T RC+C   W   S  +SC A R  I+
Sbjct: 679 TCNAITGRCSCGTGWTGPSCNASCSAGRYGIN 710


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,129,484
Number of Sequences: 59808
Number of extensions: 402914
Number of successful extensions: 903
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)