Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120412.Seq
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosi...    28   5.0  
AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical...    28   5.0  
AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical...    28   5.0  
AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyros...    28   5.0  
Z74039-4|CAA98500.1|   96|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF040657-5|AAB95052.1|  317|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 212 IVPLNKYFNYMNDKQLITYDY-SNYIEFFS 126
           I+P +KY NY+  K    +DY  N  E FS
Sbjct: 498 IIPASKYNNYLQGKYAFEFDYKENRSEVFS 527


>U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosine
           phosphatase protein2 protein.
          Length = 668

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 521 YHEVTRLLRRKSLRNCRARVCGRNWP--VF*QRVHLQVSIYVTMERR 387
           + E +R++   ++ N R   C R WP  V    VH  +S+  T+ER+
Sbjct: 366 WQENSRVIVMPTMENERKEKCARYWPAEVNKPEVHGDISLTCTIERK 412


>AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 262 YDSRCQTCPATTSRCTCWVWRSRQSSCRARRLRISN 369
           +D  C  C   +S C  W   ++   CR    RISN
Sbjct: 17  FDDECIKCDLRSSYCKTWENSTQSCECRDGFARISN 52


>AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 262 YDSRCQTCPATTSRCTCWVWRSRQSSCRARRLRISN 369
           +D  C  C   +S C  W   ++   CR    RISN
Sbjct: 17  FDDECIKCDLRSSYCKTWENSTQSCECRDGFARISN 52


>AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyrosine
           phosphatase protein.
          Length = 668

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 521 YHEVTRLLRRKSLRNCRARVCGRNWP--VF*QRVHLQVSIYVTMERR 387
           + E +R++   ++ N R   C R WP  V    VH  +S+  T+ER+
Sbjct: 366 WQENSRVIVMPTMENERKEKCARYWPAEVNKPEVHGDISLTCTIERK 412


>Z74039-4|CAA98500.1|   96|Caenorhabditis elegans Hypothetical
           protein K03B8.4 protein.
          Length = 96

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 365 QILVSDTVVFPL*RKWKLVDERAVKK 442
           QILV D +  PL +K K VD + VKK
Sbjct: 52  QILVFDQIKAPLPKKKKYVDSKQVKK 77


>AF040657-5|AAB95052.1|  317|Caenorhabditis elegans Hypothetical
           protein T20H9.3 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -2

Query: 299 EVVAGHVWQRLSYNVKPRRFNCEITRSLAIVPLNKYFNYMNDKQLITYDYSNYIEFFSFV 120
           + V G  ++ + Y+ K  +F   I  +L  V   K+F       LI++ +SN++EF S +
Sbjct: 241 DYVGGETFE-MEYSNKNGKFEVSIDENLFSVERLKFFRI----PLISFGFSNHLEFSSTI 295

Query: 119 RSI 111
             I
Sbjct: 296 SFI 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,398
Number of Sequences: 27780
Number of extensions: 300459
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)