Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120412.Seq
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.63 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 364 IYVGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRIMLNRD 245
           + +G+    LIDVN K    T  +      NDY++  N D
Sbjct: 48  VKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLKWNPD 87


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 384 PSSFHCNVNGN 416
           P++F CNV GN
Sbjct: 324 PATFTCNVRGN 334


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 445 RFFDSAFIYKFPFTLQWKDDGVTYKYLI 362
           ++F+   + +  F L + + GVTYK+ I
Sbjct: 47  KYFEQT-LNELNFNLNYVNKGVTYKHTI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,999
Number of Sequences: 438
Number of extensions: 3724
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)