Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120411.Seq
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 118 1e-27
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 57 2e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 49 8e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 47 2e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 5e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 38 0.001
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 37 0.003
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 36 0.008
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 35 0.010
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 35 0.010
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 34 0.024
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.032
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 31 0.13
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 31 0.17
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 31 0.17
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 31 0.22
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 31 0.22
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.30
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.30
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 29 0.52
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 29 0.68
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 28 1.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 4.8
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 26 6.4
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 25 8.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 118 bits (283), Expect = 1e-27
Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Frame = +3
Query: 258 PFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTM 437
PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + VK +
Sbjct: 81 PFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQL 140
Query: 438 GYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAKRWPTSCQPLCT*TTNRLF---GEVMVRL 608
G++ PTPIQ Q WP+AMSG+++VG + + + + C P + G+ + L
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMVG-ISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVL 199
Query: 609 LWSWRLPRVSTTNSASCCRFGHTSYVRNTCVFGGAPKREQ 728
+ + ++ C +FG +S +RNTCV+GG P+ Q
Sbjct: 200 VLA-PTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQ 238
Score = 64.1 bits (149), Expect = 2e-11
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPT
Sbjct: 165 ISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPT 204
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 57.2 bits (132), Expect = 2e-09
Identities = 22/40 (55%), Positives = 33/40 (82%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
VA+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PT
Sbjct: 461 VAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPT 500
Score = 52.0 bits (119), Expect = 8e-08
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVXGVEVHNPIQYFEEANFPDYVQQGVK 431
+ F K+FY + SP EV+E R + + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 432 TMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAKRWPTSCQPLCT*TTNRLF--GEVMVR 605
++GY++PT IQAQ P SG++++G K K R GE +
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIA 494
Query: 606 LLWSWRLPRVSTTNSASCCRFGHTSYVRNTCVFGGAPKREQ 728
++ + ++ C F +R C +GGAP ++Q
Sbjct: 495 IIMT-PTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQ 534
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.8 bits (111), Expect = 8e-07
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Frame = +2
Query: 494 KEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPT 628
K+ +A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPT
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPT 334
Score = 47.6 bits (108), Expect = 2e-06
Identities = 18/60 (30%), Positives = 38/60 (63%)
Frame = +3
Query: 330 RNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.2 bits (107), Expect = 2e-06
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAKRWP---T 545
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG + K
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 546 SCQPLCT*TTNRLFGEVMVRLLWSWRLPRVSTTNSASCCRFGHTSYVRNTCVFGGAPKRE 725
+ Q L + N+ V+V + R + T + + G + ++ V+GGAPK E
Sbjct: 223 ALQYLNGLSDNKSVPRVLV--VSPTRELAIQTYENLNSLIQG--TNLKAVVVYGGAPKSE 278
Query: 726 QA 731
QA
Sbjct: 279 QA 280
Score = 33.1 bits (72), Expect = 0.042
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKT+A+ +PA+ ++N + P LV++PT
Sbjct: 208 IAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPT 245
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 345 VTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V V G ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLM 210
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPT 628
AQTGSGKTLAY+LP + + P R G A+++APT
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 36.7 bits (81), Expect = 0.003
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTES*HHKFSKLLQIWTHILCS 688
A+TGSGKT AY++P + + Q I G AL+L PT + +L+ T CS
Sbjct: 58 ARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLT-AFCS 116
Query: 689 *HV 697
H+
Sbjct: 117 KHI 119
Score = 33.5 bits (73), Expect = 0.032
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 357 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLV 55
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
A TGSGKTLAY+LP + + G G AL++APT
Sbjct: 45 AVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPT 81
Score = 34.3 bits (75), Expect = 0.018
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVG 301
Score = 29.1 bits (62), Expect = 0.68
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 494 KEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
K+ A TGSGKT A+I+P + + +P ++ L+L PT
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPT 339
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 35.1 bits (77), Expect = 0.010
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTES*HHKFSK 655
+AQTGSGKT A+ LP I + NN P A+VLAPT ++ S+
Sbjct: 89 LAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISE 132
Score = 34.3 bits (75), Expect = 0.018
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+E D + + + +G+K PTPIQ + P+ ++ ++++G
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIG 88
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 33.9 bits (74), Expect = 0.024
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
A+TGSGKTLA+I+P I ++ + DG ALV++PT
Sbjct: 83 AKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPT 120
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAK 533
FE+ + G+ G++ P+PIQ + PIA+SG++++ K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
A+TGSGKT A+ LP I + P G AL+L PT
Sbjct: 51 AKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPT 84
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 321 EEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 500
+E N E+T E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 501 LV 506
++
Sbjct: 61 VI 62
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 31.1 bits (67), Expect = 0.17
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+ + + + G+K PTPIQ + P+ + G+++VG
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVG 111
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINN 574
+A+TGSGKT A+++P I H+ +
Sbjct: 112 MARTGSGKTAAFVIPMIEHLKS 133
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 30.7 bits (66), Expect = 0.22
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
A TGSGKT+AY+ P + + P G A+++APT
Sbjct: 90 APTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPT 124
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 30.7 bits (66), Expect = 0.22
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTES*HHKFSKLLQI 667
A TGSGKTLA+ +P + H +R D ALV+APT H+ + ++
Sbjct: 166 ADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQHFEL 214
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTES 634
V TG GK+L++++PA++ Q P + + LVL P S
Sbjct: 1212 VLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMS 1252
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTES 634
V TG GK+L++++PA++ Q P + + LVL P S
Sbjct: 1212 VLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMS 1252
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 29.5 bits (63), Expect = 0.52
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPT 628
A+TGSGKTLA+++P I ++ P R G G ++++PT
Sbjct: 133 AKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPT 170
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.68
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
A+TG+GKTLA++L A + P +++L+PT
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPT 121
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAI 559
A TGSGKTL+Y++P +
Sbjct: 180 AATGSGKTLSYVIPIV 195
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 220 NMRRPDW-DSVSLNLSTKTFMIHILQFSKDHHMKSKSTEII 339
+++ P W +++LNL +K+ + + +SKD K ++
Sbjct: 1152 SLKTPSWLPNLTLNLESKSTTLRTIYYSKDFDEKGNQITVL 1192
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 249 FTQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQ 383
FT+ FYDP P LK + +E+ + + V +H P+Q
Sbjct: 118 FTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 437 GLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 601
G+Q D + +LAD + +S + GK + Y +P V + ++ I+ G G
Sbjct: 82 GVQGNDFLFNGKLADLNAEEAYSHLTTPVFGKDVVYDIPNHVFMEHKKFIKSGLG 136
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 438 PLSLHLVAHNQENL--LLQSIE 379
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,730
Number of Sequences: 5004
Number of extensions: 57815
Number of successful extensions: 176
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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