Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120411.Seq
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 2e-14
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 60 2e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 56 2e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 54 2e-07
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 51 8e-07
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 48 6e-06
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 40 0.002
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 36 0.045
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 35 0.078
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 31 0.73
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 31 0.73
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 31 0.96
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 31 0.96
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 31 0.96
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 1.7
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 29 2.9
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 29 2.9
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 28 6.8
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 9.0
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 76.6 bits (180), Expect = 2e-14
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKT 434
+PFNKNFY+ HP + K+S E+++ R + V G P F F + + ++
Sbjct: 475 KPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRK 534
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG*LK----RVPAKRWPTSCQPLCT*TTNRLFGEVMV 602
+ Y +PT IQ Q PIA+SG++++G K + A WP + G +++
Sbjct: 535 LEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVL 594
Query: 603 RLLWSWRLPRVSTTNSASCCRFGHTSYVRNTCVFGGAPKREQA 731
+ L + T + RFG + VFGG K EQ+
Sbjct: 595 ICAPTRELCQQIYTEAR---RFGKAYNIHVVAVFGGGNKYEQS 634
Score = 58.4 bits (135), Expect = 6e-09
Identities = 24/40 (60%), Positives = 33/40 (82%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APT
Sbjct: 560 IAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPT 599
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVXGVEVHNPIQYFEEANFPDYVQQGVK 431
QPF K+FY P + K +P E +E+R + E + V G P++ + + + +K
Sbjct: 62 QPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLK 121
Query: 432 TMGYKEPTPIQAQGWPIAMSGKNLV 506
Y++PTPIQAQ P+ MSG++++
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMI 146
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +3
Query: 303 RSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 470
R +EV+ YR + ++TV G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +2
Query: 542 YILPAIVHINNQPPIRRGDGPIALVLAPT 628
+ILP IVHIN+QP ++ GDGPI LVL PT
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPT 141
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/77 (31%), Positives = 44/77 (57%)
Frame = +3
Query: 276 YDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 455
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 456 PIQAQGWPIAMSGKNLV 506
PIQ Q P+ +SG++++
Sbjct: 221 PIQMQVLPVLLSGRDVM 237
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 53.6 bits (123), Expect = 2e-07
Identities = 21/61 (34%), Positives = 38/61 (62%)
Frame = +3
Query: 327 YRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 507 G 509
G
Sbjct: 143 G 143
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPT 628
VA+TGSGKT A+ +P +V I P I R + GP AL+LAPT
Sbjct: 144 VAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPT 187
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 51.2 bits (117), Expect = 8e-07
Identities = 29/101 (28%), Positives = 49/101 (48%)
Frame = +3
Query: 261 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMG 440
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 441 YKEPTPIQAQGWPIAMSGKNLVG*LKRVPAKRWPTSCQPLC 563
++ PTPIQ Q MSG++++G + K S PLC
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSL-PLC 131
Score = 48.4 bits (110), Expect = 6e-06
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKTLAY LP + + + P GD P+AL+L PT
Sbjct: 115 LAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPT 154
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.4 bits (110), Expect = 6e-06
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 315 EVEEYRNNHEVTVXGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 482
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 483 AMSGKNLVG 509
G G
Sbjct: 197 MAHGPKKSG 205
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 342 EVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
EV V G I FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVM 752
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPT 628
AQTGSGKT A++LP + + N P A+ +APT
Sbjct: 755 AQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPT 797
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 342 EVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
EV V G I FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVM 175
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +2
Query: 437 GLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 616
G +R + L ++ AQTGSGKT AY+LP + + Q P+AL
Sbjct: 498 GYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALC 557
Query: 617 LAPT 628
+APT
Sbjct: 558 VAPT 561
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 378 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
I F E F + + + GY+ PTP+Q PI M+G++L+
Sbjct: 478 ITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLM 520
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 35.5 bits (78), Expect = 0.045
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGP 604
+D G+ +S Y ++ A+TG+GKTL++ LP + + + + +RG P
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAP 148
Query: 605 IALVLAPT 628
LV+APT
Sbjct: 149 KVLVMAPT 156
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 34.7 bits (76), Expect = 0.078
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT-ES*HHKFSKLLQI 667
A+TGSGKTLA+++P I + Q DG ALV++PT E + F L++I
Sbjct: 94 AKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKI 145
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 378 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
++ F + G+ G+ PT IQ QG P+A+SG++++G
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLG 92
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 607
KD G +A ++ A+TGSGKTLA+++P +V + + + +G
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRNGTG 646
Query: 608 ALVLAPT 628
++++PT
Sbjct: 647 VIIISPT 653
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 378 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
I FE+ + + + V GYK+PTP+Q PI ++L+
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLM 916
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPP 583
AQTGSGKT A+++P + I + P
Sbjct: 919 AQTGSGKTAAFLIPILSRIYMEGP 942
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 431 DNGLQRTDAYSSSRLADSYVW-KEFSWVAQTGSGKTLAYILPAIVHI 568
D G + S + + ++ ++ A+TGSGKTLA+ +P I HI
Sbjct: 147 DQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHI 193
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 420 QGVKTMGYKEPTPIQAQGWPIAMSGKNL 503
+ V +G+ PTPIQA P+A+ GK++
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDV 50
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 31.5 bits (68), Expect = 0.73
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRG 595
AQTGSGKTLAY+ P +VH + R G
Sbjct: 422 AQTGSGKTLAYLAP-LVHRLREDEERHG 448
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 494 KEFSWVAQTGSGKTLAYILPAIVHINNQPPIRR---GDGPIALVL 619
++ + VA GSGK LAY+LP I I + +GP+ L+L
Sbjct: 225 RDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPLVLIL 269
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAK 533
FE+ + G+ G+ +P+PIQ + P+A++G++++ K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAK 533
FE+ + G+ G+ +P+PIQ + P+A++G++++ K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 363 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 476
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 273 FYDPHPTVLKRSPYEVEEYRNN--HEVTVXGVEVHNPIQYFEEANFPDY 413
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
A+TGSGKT A+ LP + + + P G A+VL PT
Sbjct: 51 AKTGSGKTAAFALPILQKLCDDP-----YGIFAVVLTPT 84
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 339 HEVTVXGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 491
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTES*HHKFSK-LLQIWTHILCS 688
AQ+G+GKT + + + I+ Q +R P ALVL+PT ++ K +L + ++
Sbjct: 41 AQSGTGKTATFSISVLQAIDTQ--LRE---PQALVLSPTRELANQIQKVVLALGDYMSVQ 95
Query: 689 *HVCV 703
H C+
Sbjct: 96 CHACI 100
>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 458 YSSSRLADSYVWKEFSWVAQTGSGKTLAY 544
Y S ++ + WK FSWV + G T +Y
Sbjct: 330 YRRSGISGGWTWKAFSWVKKFGIATTKSY 358
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 494 KEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
K+ +A+TGSGKT A+ LP + + + P AL+L PT
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP-----QRLFALILTPT 41
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 223 CSDLQRILFSHQILQILQIYCHRC-QIETN 137
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 154 CQIETNYRRICCLLQIWN-HRFHGYYSS 74
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 494 KEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
K+ +A+TGSGKT A+++P + G AL+L+PT
Sbjct: 319 KDVVAMARTGSGKTAAFLIPMFEKLQTH---TAKVGIRALILSPT 360
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,163,987
Number of Sequences: 59808
Number of extensions: 446544
Number of successful extensions: 1176
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -