Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120411.Seq
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 71 8e-13
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 64 1e-10
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 60 2e-09
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 45 6e-05
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 43 3e-04
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 42 3e-04
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 42 3e-04
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 42 3e-04
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 42 3e-04
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 36 0.030
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 36 0.039
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 35 0.068
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 35 0.068
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 35 0.068
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 35 0.068
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 34 0.090
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 34 0.090
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 33 0.21
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 33 0.21
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 33 0.21
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 33 0.21
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 32 0.36
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 31 0.64
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 31 0.64
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 31 0.64
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.84
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 31 0.84
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 30 1.9
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 30 1.9
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 2.6
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 2.6
AF016427-5|AAB65357.2| 273|Caenorhabditis elegans Ground-like (... 29 2.6
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical ... 29 3.4
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 28 5.9
U23455-3|AAC46531.1| 97|Caenorhabditis elegans Hypothetical pr... 28 5.9
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 28 5.9
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 7.8
AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine re... 28 7.8
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 70.9 bits (166), Expect = 8e-13
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Frame = +3
Query: 258 PFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTM 437
P K+FY + V +R YE++++ + ++VT+ G V P+ F EA P + + +
Sbjct: 89 PIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHE-LLYG 147
Query: 438 GYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAKRWPTSCQPL--CT*TTNRLFGE--VMVR 605
+++PT IQ+ WPIAMSG++++ K K L T +R GE ++
Sbjct: 148 KFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLV 207
Query: 606 LLWSWRLPRVSTTNSASCCRFGHTSYVRNTCVFGGAPKREQA 731
LL + L + S C H+ ++ TC+FGGA K QA
Sbjct: 208 LLPTRELAQQVQEVSIDFC---HSLGLKMTCLFGGASKGPQA 246
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/40 (62%), Positives = 32/40 (80%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKTLA++LPA+VHI Q +RG+GP LVL PT
Sbjct: 172 IAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPT 211
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 64.1 bits (149), Expect = 1e-10
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKT 434
Q FNKNFY+ H + + +V +N + V G++ P+ F +F + + ++
Sbjct: 223 QKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRK 282
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG*LK----RVPAKRWPTSCQPLCT*TTNRLFGEVMV 602
Y++PTPIQA P A+SG++++G K + A WP + G V V
Sbjct: 283 SEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAV 342
Query: 603 RLLWSWRLPRVSTTNSASCCRFGHTSYVRNTCVFGGAPKREQA 731
++ + L + A +F + C +GG K EQ+
Sbjct: 343 IVVPTREL-AIQVFQEAK--KFCKVYNINPICAYGGGSKWEQS 382
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/61 (42%), Positives = 40/61 (65%)
Frame = +3
Query: 327 YRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
+R + +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + ++++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 507 G 509
G
Sbjct: 343 G 343
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 11/66 (16%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPT-------ES*HHKFSK 655
VA+TGSGKT A++LP +V I + P + R + GP A+++APT E +KF K
Sbjct: 344 VAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGK 403
Query: 656 LLQIWT 673
LL I T
Sbjct: 404 LLGIKT 409
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKTLA++LP HI +QP + GDGPIA++LAPT
Sbjct: 347 IAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPT 386
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +3
Query: 249 FTQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVXGVEVHNPIQYFEEANFPDYVQQG 425
+ + F KNFY + + + EV+ YR + +TV G++ PI+ + + +
Sbjct: 259 YYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNV 318
Query: 426 VKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+K Y +PT IQAQ P MSG++++G
Sbjct: 319 LKKFEYSKPTSIQAQAIPSIMSGRDVIG 346
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 345 VTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V G +V PI F + + +++++ +KT GY PTP+Q P G++L+
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLM 207
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPI-----------RRGDGPIALVLAPT 628
AQTGSGKT A+++P + I P R+ P ALVL+PT
Sbjct: 210 AQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPT 259
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 282 PHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTP 458
P + ++S + E R ++ G + PI F E FP + + + K G PT
Sbjct: 156 PPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTA 215
Query: 459 IQAQGWPIAMSGKNLVG 509
IQ QG P+A+SG++++G
Sbjct: 216 IQIQGIPVALSGRDMIG 232
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 598
K G+ A + + ++ +A TGSGKT+ ++LP ++ Q P R +
Sbjct: 206 KQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSE 265
Query: 599 GPIALVLAPT 628
GP L++ P+
Sbjct: 266 GPFGLIIVPS 275
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 6/46 (13%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQ-PPIRRGD-----GPIALVLAPT 628
V+QTGSGKTLA++LPA++HI+ Q + D P LVL+PT
Sbjct: 127 VSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPT 172
Score = 41.5 bits (93), Expect = 6e-04
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Frame = +3
Query: 243 FCFTQPFNKNFYDPHPTVLKRSPYEVEE-YRNNHEVTVXG------VEVHNPIQYFEEAN 401
F + +P ++ Y SP +++E Y N + V V++ P+ FE+A
Sbjct: 30 FSWMKPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAF 89
Query: 402 FPDYVQQG-VKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ G ++ G+++P+PIQ+Q WP+ +SG++ +G
Sbjct: 90 GSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIG 126
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 336 NHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
N V V G V I++F EA F V + V GY +PTP+Q P ++ ++L+
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLM 180
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/49 (51%), Positives = 29/49 (59%), Gaps = 10/49 (20%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI------NNQPPI----RRGDGPIALVLAPT 628
AQTGSGKT A++LP I HI +PP RR P ALVL+PT
Sbjct: 183 AQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPT 231
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 336 NHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
N V V G V I++F EA F V + V GY +PTP+Q P ++ ++L+
Sbjct: 108 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLM 164
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/49 (51%), Positives = 29/49 (59%), Gaps = 10/49 (20%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI------NNQPPI----RRGDGPIALVLAPT 628
AQTGSGKT A++LP I HI +PP RR P ALVL+PT
Sbjct: 167 AQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPT 215
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 336 NHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
N V V G V I++F EA F V + V GY +PTP+Q P ++ ++L+
Sbjct: 105 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLM 161
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/49 (51%), Positives = 29/49 (59%), Gaps = 10/49 (20%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI------NNQPPI----RRGDGPIALVLAPT 628
AQTGSGKT A++LP I HI +PP RR P ALVL+PT
Sbjct: 164 AQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPT 212
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI-----NNQPPIRRGDGPIALVLAPT 628
A+T +GKT A+ LP I I + R+ DGP+AL+LAPT
Sbjct: 425 AETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPT 468
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 35.5 bits (78), Expect = 0.039
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 503
FE+ N + + GY +PTPIQ P+A++GK++
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDI 188
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 494 KEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
K+ A TG+GKT A++LP + + +P + LVL PT
Sbjct: 186 KDICACAATGTGKTAAFVLPILERMIYRP--KGASCTRVLVLVPT 228
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P + F EAN + +Q+ V GY + TPIQ P+ G +++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIM 382
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPT 628
AQTGSGKT A++LP + + + + G+G P ++L PT
Sbjct: 385 AQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPT 427
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P + F EAN + +Q+ V GY + TPIQ P+ G +++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIM 382
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPT 628
AQTGSGKT A++LP + + + + G+G P ++L PT
Sbjct: 385 AQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPT 427
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTE 631
A+TGSGKT A+++P + + + G GP A+++APT+
Sbjct: 133 ARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTK 173
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P + F EAN + +Q+ V GY + TPIQ P+ G +++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIM 382
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPT 628
AQTGSGKT A++LP + + + + G+G P ++L PT
Sbjct: 385 AQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPT 427
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 34.3 bits (75), Expect = 0.090
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P + F +++ P +++ V+ GY TPIQ P+ GK+++
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDIL 339
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 494 KEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRG-DG---PIALVLAPT 628
K+ AQTGSGKT A++LP + + + + G +G P ++L PT
Sbjct: 336 KDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPT 384
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 34.3 bits (75), Expect = 0.090
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P + F +++ P +++ V+ GY TPIQ P+ GK+++
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDIL 339
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 494 KEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRG-DG---PIALVLAPT 628
K+ AQTGSGKT A++LP + + + + G +G P ++L PT
Sbjct: 336 KDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPT 384
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPT 628
AQTGSGKT A++LP + + ++ + G+G P ++L PT
Sbjct: 596 AQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPT 638
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
F EAN + +++ V GY + TPIQ P+ G +++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPT 628
AQTGSGKT A++LP + + ++ + G+G P ++L PT
Sbjct: 596 AQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPT 638
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
F EAN + +++ V GY + TPIQ P+ G +++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/39 (41%), Positives = 29/39 (74%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
A+TGSGKTLA++LPAI + ++ ++ +G ++++PT
Sbjct: 112 AKTGSGKTLAFLLPAI-ELLHKLNWKQHNGTGVIIVSPT 149
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPT 628
AQTGSGKT A++LP + + ++ + G+G P ++L PT
Sbjct: 596 AQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPT 638
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
F EAN + +++ V GY + TPIQ P+ G +++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 494 KEFSWVAQTGSGKTLAYILPAIVHINNQP 580
++ + A TGSGKT+ Y+LP + + ++P
Sbjct: 157 RDVAIAAPTGSGKTICYVLPVLAAVGSKP 185
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 369 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
H +++ V + ++ G+ +PTPIQ + P M GK++V
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVV 65
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 494 KEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
K+ +++TGSGKT A+++P + + R G AL+++PT
Sbjct: 62 KDVVAMSRTGSGKTAAFVIPMLQKLKR----RDTTGIRALMVSPT 102
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 369 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
H +++ V + ++ G+ +PTPIQ + P M GK++V
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVV 65
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 494 KEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
K+ +++TGSGKT A+++P + + R G AL+++PT
Sbjct: 62 KDVVAMSRTGSGKTAAFVIPMLQKLKR----RDTTGIRALMVSPT 102
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAI 559
KDN + +A S + A+TGSGKTLA ++P +
Sbjct: 92 KDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVL 135
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 89 VETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKN 205
+ETV+ LE N +RL+ A VA E LE + GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI------NNQPPIRRGDGPIALVLAPT 628
A+TGSGKTLA+ +P + + + + GP AL++APT
Sbjct: 33 AETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPT 77
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI------NNQPPIRRGDGPIALVLAPT 628
A+TGSGKTLA+ +P + + + + GP AL++APT
Sbjct: 200 AETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPT 244
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 425 CKDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 604
C+ G + + L + K+ +A+TGSGKT A+ +P + + + P
Sbjct: 59 CQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP-----QAF 113
Query: 605 IALVLAPT 628
LVL PT
Sbjct: 114 FCLVLTPT 121
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
A+TG+GKTLA+ +P + ++ P G AL+L PT
Sbjct: 133 ARTGTGKTLAFAIPILQKLSVDP-----YGIYALILTPT 166
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
A+TG+GKTLA+ +P + ++ P G AL+L PT
Sbjct: 133 ARTGTGKTLAFAIPILQKLSVDP-----YGIYALILTPT 166
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +2
Query: 518 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
TGSGKTLA++LP + I N G AL+L+P+
Sbjct: 55 TGSGKTLAFVLPMMRMIQNAKLQPADIG--ALILSPS 89
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI-----NNQPPIRRGDGPIALVLAPT 628
A TGSGKTLA+++P ++ + ++ P L++APT
Sbjct: 780 AHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPT 823
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI-----NNQPPIRRGDGPIALVLAPT 628
A TGSGKTLA+++P ++ + ++ P L++APT
Sbjct: 780 AHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPT 823
>AF016427-5|AAB65357.2| 273|Caenorhabditis elegans Ground-like (grd
related) protein13 protein.
Length = 273
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 249 FTQPFNK-NFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQ 383
+TQP++ +F P PT++++ PY Y H + + + HN Q
Sbjct: 61 YTQPYSPVSFRPPPPTIIQQQPY----YSVPHPIPIQTQQFHNSYQ 102
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 518 TGSGKTLAYILPAIVH 565
TG+GK+L Y LPA+VH
Sbjct: 203 TGAGKSLCYQLPAVVH 218
>AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical
protein Y38A10A.6 protein.
Length = 520
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAI-VHINNQP---PIRRGDGPIALVLAPTES 634
A TG GKT A+++PAI + + +P I P L+LA T S
Sbjct: 136 APTGIGKTYAFLIPAIEIALRERPLLTNISTTPSPTILILANTNS 180
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI 568
A TGSGKTLA+ LP I I
Sbjct: 170 APTGSGKTLAFALPVIDEI 188
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 141 RIIAEFVASSKFGTTVSTAIIPV 73
++I +FVA S G T+STA P+
Sbjct: 221 QLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 141 RIIAEFVASSKFGTTVSTAIIPV 73
++I +FVA S G T+STA P+
Sbjct: 130 QLIGDFVAGSLLGATISTAFFPL 152
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = +2
Query: 437 GLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 616
G ++ A + K+ AQ+G+GKT + + + I+++ P + ALV
Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQ-----ALV 102
Query: 617 LAPTES*HHKFSKLL 661
+APT + K++
Sbjct: 103 MAPTRELAQQIQKVM 117
>U23455-3|AAC46531.1| 97|Caenorhabditis elegans Hypothetical
protein F55E10.2 protein.
Length = 97
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2
Query: 410 LCATRCKDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYIL----PAIVHINN 574
LC+ CK+ T+ ++ L + +F WVA+ G+G L+ L ++V++NN
Sbjct: 44 LCSAFCKE-----TNKAAAENLVKIHYNHQFDWVAEIGTGLPLSGFLRRKDESVVYLNN 97
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = +2
Query: 437 GLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 616
G ++ A + K+ AQ+G+GKT + + + I+++ P + ALV
Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQ-----ALV 102
Query: 617 LAPTES*HHKFSKLL 661
+APT + K++
Sbjct: 103 MAPTRELAQQIQKVM 117
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 217 DLQRILFSHQILQILQIYCHRCQIETN-YR-RICCL 116
D +S I QI+ +CH+ +++TN +R RI CL
Sbjct: 268 DASIFFYSFAIPQIMTCFCHKWKVQTNTFRIRIGCL 303
>AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine
receptor, class t protein53 protein.
Length = 318
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -3
Query: 491 RHSYRPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNAXYSYLVIISVLFDFI 312
R S+RP + +R+ F+ L L+H+ I + +M +L IIS ++
Sbjct: 224 RKSFRPKRTARQRQIFLQAFLLCLIHLSASILYV-----VMQFIEVPKFLTIIS---QYL 275
Query: 311 W*SFENCRMWIIKVF 267
W + C + I +F
Sbjct: 276 WQLAQGCPVIIYLIF 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,672,706
Number of Sequences: 27780
Number of extensions: 326691
Number of successful extensions: 921
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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