Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120411.Seq
(733 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 113 2e-25
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 106 2e-23
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 106 2e-23
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 81 7e-16
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 81 7e-16
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 81 7e-16
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 75 5e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 73 3e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 66 2e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 66 2e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 62 4e-10
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 55 4e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 46 2e-05
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 44 8e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 43 2e-04
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 42 4e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 42 4e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 41 7e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 40 0.002
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 39 0.004
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 38 0.009
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 37 0.016
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 36 0.021
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 36 0.028
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 36 0.028
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 36 0.028
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 36 0.037
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 35 0.048
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 35 0.064
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 34 0.085
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 34 0.085
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 34 0.11
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 34 0.11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 33 0.15
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 33 0.15
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 33 0.15
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 33 0.20
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 32 0.34
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 32 0.34
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 32 0.45
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 32 0.45
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 32 0.45
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 32 0.45
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 31 0.60
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 31 1.0
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 31 1.0
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 31 1.0
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 30 1.8
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 30 1.8
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 30 1.8
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 2.4
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 29 3.2
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 3.2
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo... 29 3.2
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 29 4.2
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 29 4.2
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 5.6
At2g33420.1 68415.m04096 expressed protein 28 5.6
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 7.3
At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i... 27 9.7
At2g25460.1 68415.m03049 expressed protein 27 9.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 113 bits (271), Expect = 2e-25
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 3/160 (1%)
Frame = +3
Query: 258 PFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTM 437
PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 58 PFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKA 117
Query: 438 GYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAKRWPTSCQPLCT*TTNRLFGE---VMVRL 608
G+ EPTPIQ+QGWP+AM G++L+G + K + + +V +
Sbjct: 118 GFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLV 177
Query: 609 LWSWRLPRVSTTNSASCCRFGHTSYVRNTCVFGGAPKREQ 728
L R V AS +FG +S ++ TC++GG PK Q
Sbjct: 178 LAPTRELAVQIQQEAS--KFGSSSKIKTTCIYGGVPKGPQ 215
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPT
Sbjct: 142 IAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPT 181
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 106 bits (254), Expect = 2e-23
Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Frame = +3
Query: 231 PRLGFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPD 410
P+ F F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 411 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAKRWPTSCQPLCT*TTNRLFG 590
+ + + +G+ EPTPIQAQGWP+A+ G++L+G + K L + G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 591 E---VMVRLLWSWRLPRVSTTNSASCCRFGHTSYVRNTCVFGGAPKREQ 728
+ +V +L R V + +FG S VR+TC++GGAPK Q
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESR--KFGLRSGVRSTCIYGGAPKGPQ 281
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/40 (65%), Positives = 35/40 (87%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPT
Sbjct: 208 IAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPT 247
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 106 bits (254), Expect = 2e-23
Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Frame = +3
Query: 231 PRLGFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPD 410
P+ F F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 411 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAKRWPTSCQPLCT*TTNRLFG 590
+ + + +G+ EPTPIQAQGWP+A+ G++L+G + K L + G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 591 E---VMVRLLWSWRLPRVSTTNSASCCRFGHTSYVRNTCVFGGAPKREQ 728
+ +V +L R V + +FG S VR+TC++GGAPK Q
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESR--KFGLRSGVRSTCIYGGAPKGPQ 281
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/40 (65%), Positives = 35/40 (87%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPT
Sbjct: 208 IAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPT 247
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 81.0 bits (191), Expect = 7e-16
Identities = 48/149 (32%), Positives = 68/149 (45%)
Frame = +3
Query: 282 PHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 461
P P+ S E Y HE+TV G +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 462 QAQGWPIAMSGKNLVG*LKRVPAKRWPTSCQPLCT*TTNRLFGEVMVRLLWSWRLPRVST 641
QAQ WPIAM G+++V K K R + +L ++T
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELAT 244
Query: 642 TNSASCCRFGHTSYVRNTCVFGGAPKREQ 728
+FG +S + TC++GGAPK Q
Sbjct: 245 QIQEEAVKFGRSSRISCTCLYGGAPKGPQ 273
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKTL Y++P +H+ R GP LVL+PT
Sbjct: 201 IAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPT 239
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 81.0 bits (191), Expect = 7e-16
Identities = 48/149 (32%), Positives = 68/149 (45%)
Frame = +3
Query: 282 PHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 461
P P+ S E Y HE+TV G +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 462 QAQGWPIAMSGKNLVG*LKRVPAKRWPTSCQPLCT*TTNRLFGEVMVRLLWSWRLPRVST 641
QAQ WPIAM G+++V K K R + +L ++T
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELAT 244
Query: 642 TNSASCCRFGHTSYVRNTCVFGGAPKREQ 728
+FG +S + TC++GGAPK Q
Sbjct: 245 QIQEEAVKFGRSSRISCTCLYGGAPKGPQ 273
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKTL Y++P +H+ R GP LVL+PT
Sbjct: 201 IAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPT 239
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 81.0 bits (191), Expect = 7e-16
Identities = 48/149 (32%), Positives = 68/149 (45%)
Frame = +3
Query: 282 PHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 461
P P+ S E Y HE+TV G +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 462 QAQGWPIAMSGKNLVG*LKRVPAKRWPTSCQPLCT*TTNRLFGEVMVRLLWSWRLPRVST 641
QAQ WPIAM G+++V K K R + +L ++T
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELAT 244
Query: 642 TNSASCCRFGHTSYVRNTCVFGGAPKREQ 728
+FG +S + TC++GGAPK Q
Sbjct: 245 QIQEEAVKFGRSSRISCTCLYGGAPKGPQ 273
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKTL Y++P +H+ R GP LVL+PT
Sbjct: 201 IAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPT 239
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 74.9 bits (176), Expect = 5e-14
Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Frame = +3
Query: 264 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVK 431
NK+ PH P V SP E+ YR HEVT G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 432 TMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAKR--WPTSCQPLCT*TTNRLFGEVMVR 605
+ G+ PTPIQAQ WPIA+ +++V K K + L N V
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVL 511
Query: 606 LLWSWRLPRVSTTNSASCCRFGHTSYVRNTCVFGGAPKREQ 728
+L R ++T RFG +S + TC++GGAPK Q
Sbjct: 512 ILAPTR--ELATQIQDEALRFGRSSRISCTCLYGGAPKGPQ 550
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKTL Y++PA + + + R +GP L+LAPT
Sbjct: 478 IAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPT 516
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 72.5 bits (170), Expect = 3e-13
Identities = 28/85 (32%), Positives = 49/85 (57%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKT 434
+P NK+FY+ ++ + E +YR + V G +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
Y++PT IQ Q PI +SG++++G
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVIG 270
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/46 (52%), Positives = 35/46 (76%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTES*HHK 646
+A+TGSGKT A++LP IVHI +QP ++R +GPI ++ APT H+
Sbjct: 271 IAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQ 316
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/85 (35%), Positives = 47/85 (55%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKT 434
+PF KNFY + + + V YR E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
+ Y++P PIQAQ PI MSG++ +G
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCIG 438
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
VA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APT
Sbjct: 439 VAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPT 478
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/85 (34%), Positives = 47/85 (55%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKT 434
+PF KNFY + + + EV YR E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
+ Y++P PIQ Q PI MSG++ +G
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCIG 571
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
VA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APT
Sbjct: 572 VAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPT 611
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/90 (32%), Positives = 51/90 (56%)
Frame = +3
Query: 240 GFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQ 419
G +T+P + ++ P V K S +++ R +TV G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 420 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ +K G PTPIQ QG P+ +SG++++G
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIG 139
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 598
KD G+ L ++ +A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 599 GPIALVLAPT 628
GPIALV+ P+
Sbjct: 173 GPIALVICPS 182
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/90 (30%), Positives = 48/90 (53%)
Frame = +3
Query: 240 GFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQ 419
G +T+P + P + K S + + R + V G ++ PI+ F++ FP V
Sbjct: 100 GITYTEPLLTG-WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVL 158
Query: 420 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+K G +PTPIQ QG P+ ++G++++G
Sbjct: 159 DTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 598
K+ G+ + L ++ +A TGSGKTL ++LP I+ + PI G+
Sbjct: 162 KEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGE 221
Query: 599 GPIALVLAPT 628
GPI L++ P+
Sbjct: 222 GPIGLIVCPS 231
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPT 628
+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APT
Sbjct: 356 IAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPT 398
Score = 41.9 bits (94), Expect = 4e-04
Identities = 15/61 (24%), Positives = 35/61 (57%)
Frame = +3
Query: 327 YRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 507 G 509
G
Sbjct: 355 G 355
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 44.4 bits (100), Expect = 8e-05
Identities = 28/101 (27%), Positives = 43/101 (42%)
Frame = +3
Query: 426 VKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAKRWPTSCQPLCT*TTNRLFGEVMVR 605
V + G+ P+PIQAQ WPIAM +++V K K +
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303
Query: 606 LLWSWRLPRVSTTNSASCCRFGHTSYVRNTCVFGGAPKREQ 728
+L ++T +FG +S + C++GGAPK Q
Sbjct: 304 ILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQ 344
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKTL Y++P +H+ R GP LVL+PT
Sbjct: 272 IAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPT 310
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 321 EEYRNNHEVTVXGVEVHNPIQYFEEANFPD 410
E Y HE+TV G +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +3
Query: 348 TVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 503
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDL 207
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 425 CKDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 604
C+ G ++ ++ + + ++ A TGSGKT A+ LP + + +P +R
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFAT 239
Query: 605 IALVLAPT 628
L+L PT
Sbjct: 240 RVLILTPT 247
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPT 628
A TG+GKT+AY+ P I H+ + P + R G ALV+ PT
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPT 113
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +3
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLV 506
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +3
Query: 315 EVEEYRNNHEVTVXGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 488
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 489 SGKNLVG 509
G++L+G
Sbjct: 150 DGRDLIG 156
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTES*HHKFSKLLQ 664
+A+TGSGKTLA+ +PAI+H+ I G P LVL+PT + S +L+
Sbjct: 157 IAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLR 212
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 330 RNNHEVTVXGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 497
R + + V G + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAP 625
A TGSGKT A+I P ++ + DG A++L+P
Sbjct: 185 APTGSGKTFAFICPMLIKLKRPST----DGIRAVILSP 218
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 357 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
G V P+ F P + ++T GY PTPIQ Q P A++GK+L+
Sbjct: 102 GSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLL 151
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPT 628
A TGSGKT ++++P I +++ P + P+A+VLAPT
Sbjct: 154 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPT 195
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP- 604
KD G + + L K+ A+TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 605 --IALVLAPT 628
I LV+ PT
Sbjct: 458 PIIVLVVCPT 467
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE N V +K GYK PTPIQ + P+ +SG ++V
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVV 69
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +2
Query: 509 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
+A+TGSGKT A+++P + + P +G G AL+L+PT
Sbjct: 71 MARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPT 107
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 PFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKT 434
PF + +P P ++ + + + + G V P+ F E + + + ++
Sbjct: 117 PFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRR 176
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLV 506
Y +PTP+Q PI + G++L+
Sbjct: 177 CKYVKPTPVQRHAIPILLEGRDLM 200
Score = 34.7 bits (76), Expect = 0.064
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPT 628
AQTGSGKT A+ P I I ++R G P+A++L+PT
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPT 246
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +2
Query: 425 CKDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 604
CK+ G+++ + + ++ +AQTGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 605 IALVLAPT 628
ALV+ PT
Sbjct: 128 FALVVTPT 135
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
FE ++ + K +G ++PTP+Q P ++G++++G
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLG 100
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 35.9 bits (79), Expect = 0.028
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGD--G 601
KD G + + L K+ A+TG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 602 PI-ALVLAPT 628
PI ALV+ PT
Sbjct: 130 PILALVICPT 139
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 363 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIG 51
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = +2
Query: 425 CKDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHI-----NNQPPIR 589
C+ G + + L + K+ +AQTGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 590 RGDGP--IALVLAPT 628
R P A VL+PT
Sbjct: 84 RRPDPAFFACVLSPT 98
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 35.9 bits (79), Expect = 0.028
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 TQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGV 428
T PF N DP + + E Y + + G V P+ F E + + + +
Sbjct: 103 TNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNI 161
Query: 429 KTMGYKEPTPIQAQGWPIAMSGKNLV 506
+ Y +PTP+Q PI +G++L+
Sbjct: 162 QRCKYVKPTPVQRNAIPILAAGRDLM 187
Score = 34.7 bits (76), Expect = 0.064
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPT 628
AQTGSGKT A+ P I I I R G P+A++L+PT
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPT 233
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 35.5 bits (78), Expect = 0.037
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVH-INNQPPIRRGDGPIALVLAPT 628
A+TG+GKTLA+ +P I I RG P+ LVLAPT
Sbjct: 148 ARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPT 187
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPT 628
A+TG+GKT+A++LP+I + PP R + I LV+ PT
Sbjct: 124 AKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPT 165
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 34.7 bits (76), Expect = 0.064
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVH-INNQPPIRRGDGP 604
K G+++ + L + ++ A+TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 605 IALVLAPT 628
LVLAPT
Sbjct: 192 QCLVLAPT 199
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPT 628
A+TG GKTLA++LP + + N P + G P LVL PT
Sbjct: 140 ARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPT 183
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 34.3 bits (75), Expect = 0.085
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 315 EVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 494
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 495 KNLV 506
K++V
Sbjct: 84 KDVV 87
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPT 628
A+TGSGKTLAY+LP + + + + ++ P A +L P+
Sbjct: 90 AKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPS 129
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 607
K+ G R + + + ++ A+TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 608 ALVLAPT 628
LV+ PT
Sbjct: 229 VLVICPT 235
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/85 (24%), Positives = 36/85 (42%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKT 434
+P K T K EVE+ ++ + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
MG+ T IQA+ P M G++++G
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLG 196
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPT 628
A TGSGKT ++++P I +++ P + P+A+VLAPT
Sbjct: 17 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPT 58
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPT 628
AQTGSGKT A+ P I I + R G P A++L+PT
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPT 238
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 345 VTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V G +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPT 628
AQTGSGKT A+ P I I + R G P A++L+PT
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPT 238
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 345 VTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V G +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGP 604
K+ G Q + + K+ A+TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 605 IALVLAPT 628
+V+ PT
Sbjct: 164 -VIVICPT 170
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
PI+ F++ D V +GV GYK+P+ IQ + + G++++
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVI 63
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAK 533
FE+ + G+ G++ P+PIQ + PIA++G++++ K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAK 533
FE+ + G+ G++ P+PIQ + PIA++G++++ K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/60 (28%), Positives = 35/60 (58%)
Frame = +2
Query: 449 TDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 628
TD S++ + + ++ A+TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAK 533
FE+ + +G+ G+++P+PIQ + PIA++G +++ K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAK 533
FE+ + +G+ G+++P+PIQ + PIA++G +++ K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG*LKRVPAK 533
FE+ + +G+ G+++P+PIQ + PIA++G +++ K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +2
Query: 434 NGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 601
+G+ + + L++ K+ A+TG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 602 PIALVLAPT 628
AL+L PT
Sbjct: 406 IFALILCPT 414
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +2
Query: 515 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPT 628
Q+GSGKTLAY++P I + Q + G P +VL PT
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPT 460
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPT 628
A TGSGKTLA++LP I I N+ PP + + ++++PT
Sbjct: 60 AATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPT 99
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPT 628
A TGSGKTLA++LP I I N+ PP + + ++++PT
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPT 100
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQ----PPIRR-GDGPIALVLAPT 628
A+TG+GKTLA+ +P I + + RR G P LVLAPT
Sbjct: 146 AKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPT 189
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +2
Query: 434 NGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 601
+G+ + + L++ K+ A+TG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 602 PIALVLAPT 628
L+L PT
Sbjct: 453 IFVLILCPT 461
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 428 KDNGLQRTDAYSSSRLADSYVWKEFSWVAQTGSGKTLAYILPAIVHINN 574
+D+G R + + K+ A+TGSGKT Y+ P I + N
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPT 628
+ TGSGKTLAY+LP IV + + G P +VL PT
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPT 198
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 482 SYVWKEFSWVAQTGSGKTLAYILPAI 559
+Y K+ A+TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 518 TGSGKTLAYILPAIVHI 568
TGSGKTLAY+LP + I
Sbjct: 156 TGSGKTLAYLLPILSEI 172
>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
similarity to mannosidase [gi:5359712] from Cellulomonas
fimi
Length = 944
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 363 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA----QGWPIAMSGKNLVG*LKRVPA 530
E+ P +F++ + V ++G I+A +GW I + K L G +K VP
Sbjct: 529 EIQYPEDFFKDTYYKYGFNPEVGSVGMPVAETIRATMPPEGWTIPLFKKGLDGFIKEVPN 588
Query: 531 KRW 539
+ W
Sbjct: 589 RMW 591
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 512 AQTGSGKTLAYILPAIVHINNQ 577
AQTGSGKTL Y+L IN Q
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ 141
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 491 WKEFSWVAQTGSGKTLAYILPAI 559
+K+ + A TGSGKTLA+++P +
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLV 75
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 518 TGSGKTLAYILPAIVHINNQPPIR 589
TGSGKTL+Y LP IV + P+R
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR 93
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 9 SKRIHSLNKHLQLNPKI 59
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 9 SKRIHSLNKHLQLNPKI 59
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron
superoxide dismutase, putative similar to Fe-superoxide
dismutase precursor [Medicago sativa]
gi|16974682|gb|AAL32441
Length = 305
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -3
Query: 407 RKICFFKVLNRIMNLNAXYSYLVIISVLFDFIW*SFENCRMWIIKVFVERLSETESQSGR 228
+K+ K N + L YS L+ I + FEN R I F+E+L E+ S R
Sbjct: 203 KKLVIVKTPNAVNPLVWDYSPLLTIDTWEHAYYLDFENRRAEYINTFMEKLVSWETVSTR 262
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 9.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 145 ETNYRRICCLLQIWNHRFHGYY 80
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,989
Number of Sequences: 28952
Number of extensions: 302827
Number of successful extensions: 913
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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