Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120410.Seq
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    78   1e-15
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   4.7  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   4.7  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   6.2  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   8.2  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 34/70 (48%), Positives = 44/70 (62%)
 Frame = +1

Query: 505 YKASFTIADRIYGSTFCIATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y 684
           + A FTI+D +YG++F  ATG HGIH+I+GT+ LL+        H +  HH GFE    Y
Sbjct: 194 WNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYY 253

Query: 685 *HFVDVV*LF 714
            HF DVV LF
Sbjct: 254 WHFCDVVWLF 263



 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
 Frame = +2

Query: 278 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRL 451
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 452 FLTILLGFYFTILQAYEY 505
           ++TI L F F   QAYEY
Sbjct: 176 YMTIALSFLFLGGQAYEY 193



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 138 RDISREGTYQGKHTILVNKGLR*G 209
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 454 FNYFIRILFYYFTSI*IYKASFTIADRIYGSTFCIATGFHG 576
           F+Y  R   YY  +I I+    T A       FC  TG+ G
Sbjct: 563 FHYNQRTTIYYLVAISIFALGLTYAAVPLYRLFCSKTGYGG 603


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 454 FNYFIRILFYYFTSI*IYKASFTIADRIYGSTFCIATGFHG 576
           F+Y  R   YY  +I I+    T A       FC  TG+ G
Sbjct: 563 FHYNQRTTIYYLVAISIFALGLTYAAVPLYRLFCSKTGYGG 603


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 568 FHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 693
           +  I +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 130 YGNIKIFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 416 IENNFSQTKQRLFLTILLGFYFTILQAYE 502
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,110
Number of Sequences: 5004
Number of extensions: 35965
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)