Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120409.Seq
         (760 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54FM2 Cluster: Putative uncharacterized protein; n=2; ...    35   1.9  
UniRef50_Q4ZSN4 Cluster: Putative uncharacterized protein precur...    33   7.7  

>UniRef50_Q54FM2 Cluster: Putative uncharacterized protein; n=2;
           Eukaryota|Rep: Putative uncharacterized protein -
           Dictyostelium discoideum AX4
          Length = 777

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 141 KTLKIQFGWLSYYHCRIPYGMCVNNFNTNKTIFIDLS 251
           K + ++ G L YY  R+PY +  NN N N  +FI LS
Sbjct: 730 KEITLKKGDLIYYDSRLPYCIISNNKNNNNNLFIKLS 766


>UniRef50_Q4ZSN4 Cluster: Putative uncharacterized protein
           precursor; n=1; Pseudomonas syringae pv. syringae
           B728a|Rep: Putative uncharacterized protein precursor -
           Pseudomonas syringae pv. syringae (strain B728a)
          Length = 89

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -1

Query: 319 LPLKFCTLYIAGSQKNKF-----NTDQGDRSMNIVLFVLKLLTHIPYGILQ**YD 170
           LPL FC LY+AG Q   F     NTD+        L +L +L  +   ++Q  YD
Sbjct: 14  LPLAFCLLYLAGRQLRTFAAWADNTDRPKERAKAYLVMLAILGFVAGSMMQPLYD 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,702,373
Number of Sequences: 1657284
Number of extensions: 14609919
Number of successful extensions: 28214
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28209
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)