Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120409.Seq
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    30   0.31 
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    29   0.54 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    29   0.95 
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    28   1.3  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    28   1.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.9  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.8  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    26   6.7  
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    26   6.7  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 12/46 (26%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
 Frame = -2

Query: 690 ITLVW*G--TNFQ*QLALRPQITRKLDITRVRRVGKKHTLKYRVNL 559
           +T+ W     N+Q ++ L+ +  ++L +TR++++ K++ +K+R++L
Sbjct: 503 LTIAWEAWKDNYQRRIKLQKE-AQELQLTRIQKIAKQYLIKWRISL 547


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 186 YNDNMTTNRIESLKFS*SVYKEKCITQNQNFDSLPKKIFYLLYRHYCFFFKQ 31
           Y  +   +  + L +     KEK +T + N  SL    +YL+Y+H C  F+Q
Sbjct: 21  YKSSKIQDEAKQLLYDYVYIKEKLLTTSSN--SLTHYQWYLIYKHTCRCFQQ 70


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +3

Query: 393 LRSLTSIRYVDNNGILKKSIITLVI 467
           +R LTS++ VD+NG++K+S+   V+
Sbjct: 173 MRYLTSVQGVDHNGVVKRSVENQVL 197


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 324 NDYPSSFVRYTLQAHKK 274
           NDYP SFVRY  +  KK
Sbjct: 337 NDYPDSFVRYFYEEQKK 353


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +1

Query: 82  W*TVEILVLRNAFLFVNRSGKL*RFNSVGCHIIIVEYHMGCVSTTLTQIKRYSLTY 249
           W     L  +N + +  +   L RF  + C + +  +H+ C+S   T +  +S  Y
Sbjct: 30  WNEPHTLNEQNTYCYCGKDRNL-RFPDLQCSVCLNMFHLSCLSPPCTSMMGFSTNY 84


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/69 (23%), Positives = 38/69 (55%)
 Frame = +1

Query: 1   LKSLVLYRIVLFEKKTIVSI**IKDFFW*TVEILVLRNAFLFVNRSGKL*RFNSVGCHII 180
           L  L+ +RI++ +K  +VSI  I   ++  V+ + +++A +  +RS  L +F  +   ++
Sbjct: 147 LSFLLCFRIIISQKAALVSI-GISTLYYCFVQFMEVKSALISYDRS--LFKFYPIDLFVL 203

Query: 181 IVEYHMGCV 207
           ++     C+
Sbjct: 204 LLSQSFICI 212


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 532 EQMLLSVYVKVDPVF*SVFFSNPSHSSNVEFP 627
           E+ LL + V   P F  VF+   SHSS  + P
Sbjct: 571 ERKLLVILVHPSPYFECVFYDETSHSSVYKVP 602


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 690 CIHGDIFQEEASRVQRAYHC 749
           C  GD+ ++EA R  R +HC
Sbjct: 180 CWTGDVCEDEAFRGSRQFHC 199


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -1

Query: 403 KDRNRPCSSYMPILSKSRQLSTRLLVQ*LPLKFCTLYIAGSQKNKFNTDQGDRSMNIVLF 224
           K R RP ++ +  + K  Q ST LL+Q LP       I+      F+TD G R  +  L 
Sbjct: 19  KKRYRPGTTALREIRKY-QRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQ 77

Query: 223 VLK 215
            L+
Sbjct: 78  CLQ 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,061
Number of Sequences: 5004
Number of extensions: 68349
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)