Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120409.Seq
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0042 - 25131962-25132149,25132261-25132345,25132750-251327...    28   9.3  

>05_06_0042 -
           25131962-25132149,25132261-25132345,25132750-25132797,
           25133084-25133197,25133279-25133410,25134029-25134124,
           25134771-25135005,25135054-25135322,25135408-25135491,
           25136529-25136703,25138018-25138229
          Length = 545

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 129 KPIRKTLKIQFGWLSYYHCRIPYGMC-VNNFNTNKTIFIDLSPWSVLNLF 275
           K  R T+K  FG   YY+  +PY  C V +   N  + +    W  ++LF
Sbjct: 492 KSKRPTIKTLFGIEHYYYLLVPYTPCTVFHDMFNLLLSLKQRAWMKMSLF 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,150,677
Number of Sequences: 37544
Number of extensions: 359761
Number of successful extensions: 629
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)