Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120409.Seq
         (760 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    26   1.1  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    25   1.9  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   7.7  

>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 700 P*IHYFGLVGNQLSVTTRFKTSNHE-ETRHY*SAKGWKKTHFKI 572
           P +  FG +GN LSV   FKT   +  + +Y +A G   T + I
Sbjct: 128 PALVLFGSIGNVLSVLVFFKTKLRKLSSSYYLAALGLSDTFYLI 171


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 237 FIDLSPWSVLNLFFCEPAMYSVQNLR 314
           F+  S  S+++L FC PA+ S  N R
Sbjct: 160 FVRNSRTSIIDLTFCSPALASSMNWR 185


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 395  QSSLFFLHANFI*IKTTKYTFVSAMITPQVLYAIHCRLTKK*I*YRP 255
            Q S+FF H      +    T V A  T  ++   H   T K + +RP
Sbjct: 1148 QLSMFFFHTKETIQQPANVTMVRASNTISLVTVRHVNETSKFVVFRP 1194


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,261
Number of Sequences: 2352
Number of extensions: 16820
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)