Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120408.Seq
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    35   0.009
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    31   0.20 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   6.6  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   7.7  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   7.7  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 287 DTNYGVIEELNKKLAFASESLAEAN--EKIIHFANALVTANAGLVQANTMLNEARRETAH 460
           DT + V E +N +L   S +   ++     +H   A++ AN GL+     L+  R E   
Sbjct: 513 DTQWNVEEHINPRLPEGSINDYPSSFWSDFLHLNRAMLRANNGLIPDEDKLDALRSEAYQ 572

Query: 461 WPTAWRTLR 487
           WP    TLR
Sbjct: 573 WPFLLATLR 581


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 299 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGL-VQANTMLNEARR 448
           G++    KK+        E+ EK+ H  + ++ A AGL   AN ++N ARR
Sbjct: 42  GIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARR 92


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 151 LITKEGVIQLIMKSKLPYAV 210
           L+ K+GV+ L+ K KLP++V
Sbjct: 542 LLVKDGVVHLVDKVKLPFSV 561


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 281 KMDTNYGVIEELNKKLAFASESLAEANEKI 370
           K++ +   +++L KKLA  ++   E NEKI
Sbjct: 218 KLEVSSRQVQDLEKKLAGLAQQNTELNEKI 247



 Score = 22.6 bits (46), Expect(2) = 6.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 305 IEELNKKLAFASESLAEANEKIIHFANALVTANAGL 412
           IEE  K+  FAS S     E ++   +ALV+  A L
Sbjct: 173 IEERKKQHMFASSSSRVKEEILVQEKSALVSDLASL 208



 Score = 21.0 bits (42), Expect(2) = 6.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 404 AGLVQANTMLNE 439
           AGL Q NT LNE
Sbjct: 234 AGLAQQNTELNE 245


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 113 LTTLSGAGVYGIDPDSLYVVLYFLS 39
           L+ L+    Y +DPD +Y +L FLS
Sbjct: 800 LSALASTIGYKLDPDDVYNILSFLS 824


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 570 LRAQKRSLNRSIKRLGSSDVVFSSDYVPNA 659
           + A+   + + +  LG++  VFS DY+ NA
Sbjct: 77  INAEANVITKQLYLLGTNTSVFSEDYLSNA 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,952
Number of Sequences: 5004
Number of extensions: 57795
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)